Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13172g00001 TATCACTACTGCAGGATCGAAGGTGCTGAAATCAACAAGAGTCTTTTGGCTTTGAAGGAGTGCATCCGTGCTTTGGACAATGATCAGATCCATATTCCTTTTCGGGGAAGCAAACTTACGGAAGTACTCCGTGACTCCTTTGTTGGAAATTCAAAAACTGTTATGATCTCTTGTATATCCCCAAATGCTGGGTCTTGTGAACACACACTTAATACCTTGAGATATGCAGACCGAGTTAAAAGTCTATCCAAGAGTGGAAATCCTCGGAAGGACCAGGCCCCAAATCCAGTTCCACCAGTCAATAAAGAGGCTTCACCCACATCTTCACTTCTTGCTAGCATGGGTACAGAGGATTTTAATGGTCAGCGTCAAGAGATAAAAGCAACGGACTTGGGCAGAAAAGCTGTAGAAAAGGAAAGTTCTTTCTACAGCTCTTCCACTGATGTTGACAAACAACTATCAAGTTTCTCTTCTAGTTATTCATACAATGGGCGAGAAGATAAAAGCCTGGCTTCTGCTCCAATGGACAGGGAAAGGTTTGAAGTAAAGAATTCTTACGGTGATTCTACCAATCAAAAGATGAACTCTTATTCCCTAAATGTTACAGATGAGAAAGTGCAAAGGGTGTCTCCTCCACGCAGAAAAGGAACTAAGGAGGAGAAACCCGAAAGATCTATAAATTGGGTAAAAAGGGATTCCAATGGTTCTAATAACACCACAAGCTCCAAGCAGCAGAACACAGGAAATTATAACACAGTTAGCACTGGATCGGGGCAGTCTGAAACAGAATCCTCTTCTGACGTGAATATCAGCGCAATACTTCAGGAAGAAGAAGCACTAATTGCTGCTCATAGGAAAGAAATTGAGGACACAATGGAGATTGTTCGTGAAGAAATGAAACTATTGGCAGAAGTG 915 0.4197 YHYCRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNAGSCEHTLNTLRYADRVKSLSKSGNPRKDQAPNPVPPVNKEASPTSSLLASMGTEDFNGQRQEIKATDLGRKAVEKESSFYSSSTDVDKQLSSFSSSYSYNGREDKSLASAPMDRERFEVKNSYGDSTNQKMNSYSLNVTDEKVQRVSPPRRKGTKEEKPERSINWVKRDSNGSNNTTSSKQQNTGNYNTVSTGSGQSETESSSDVNISAILQEEEALIAAHRKEIEDTMEIVREEMKLLAEV 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13172g00001 305 SMART kinesin_4 3 88 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium13172g00001 305 Gene3D Kinesin motor domain 4 87 IPR036961 -
Vium13172g00001 305 MobiDBLite consensus disorder prediction 170 184 - -
Vium13172g00001 305 Pfam Kinesin motor domain 7 81 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium13172g00001 305 ProSiteProfiles Kinesin motor domain profile. 1 82 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium13172g00001 305 Coils Coil 274 305 - -
Vium13172g00001 305 MobiDBLite consensus disorder prediction 156 266 - -
Vium13172g00001 305 PANTHER KINESIN-RELATED PROTEIN 6 5 305 IPR027640 GO:0003777|GO:0007018
Vium13172g00001 305 MobiDBLite consensus disorder prediction 185 205 - -
Vium13172g00001 305 MobiDBLite consensus disorder prediction 207 228 - -
Vium13172g00001 305 MobiDBLite consensus disorder prediction 229 266 - -
Vium13172g00001 305 MobiDBLite consensus disorder prediction 82 107 - -
Vium13172g00001 305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 83 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13172g00001 Vium-Chr13172 284 1877 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13172g00001 4 82 Calmodulin-binding Proteins AT5G65930 43.750 4.73e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13172g00001 K10393 - vum:124821845 579.711