Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1316g00001 ATGAAGAACATTCTTAAGAAGCTTCATATCATGTCTAACCAATCGGATGATGCACAGGGGGCTACTTCATCAAAGAGCACCAAGTCCAGTGACGGTTCATCTTCCACTACCCCTAAGAAGCTTTCGAATTGGTTGCATTCAGTTTCTAATAGGCAGAGTCCCAGTCCTCCGTCTCCTAATCTTGCCAGAGGAGAAAGAATGGACCCATCTGATTCAGTGAGCAGTGGTGGTTTGGATGTTGTGTCTGATTCAGCAAGGCGTGATTCGGAGTCTAGCGCGTCTAGGGATCCTGAAGTGGAAGAGGAATATCAGATACAACTGGCTTTGGAGCTGAGTGCAAAAGAGGATCCTGAGGCTGTACAGATTGAAGCTGTTAAGCAGATCAGTTTGGGATCTTGTGACCCTGATAATACACCAGCTGAAGTTGTGGCCTACCGGTACTGGAATTACAATGCTCTTGGTTATGATGACAAGATCTCAGATGGTTTCTATGATCTGTATGGAATCTTGACTGAGACAACCTCTGCAAGAATGCCTTCTCTAGTAGATCTGCAAGGAAAATCAACCTCAATTGATGTCACATGGGAAGCAGTCTTGGTCAATAGGGCTGCTGATTCCAACTTGTTGAAACTTGAACAAGAAGCCATGAAGATGGCTGCCAGTTCAGGAAAAGATTTTGAAGTAGTTGTAAATAGCAATTTGGTACACAAGCTTGCAATAATGGTAGCTGACTATATGGGTGGATCAGTTAAAGATCCTGAAAGCATGTCTAGAGCCTGGAGGAGTCTTAGTTACAGTCTAAAAGCCACCCTTGGCAGCATGGTTTTGCCTCTTGGTTCACTGACCATTGGATTGGCTCGGCATCGAGCATTGTTATTCAAGGTTTTAGCAGACAGTTTGGGCATACCGTGTCGATTGGTGAAAGGACTGCAGTATATGGGTTCTGATGATGTGGCAATGAACTTTGTCAAGATTGATGATGGAAGGGAGTACATTGTGGACCTAATGGCAGCTCCTGGAGCACTTATTCCATCTGATGCTACTGCATCACACATTGAATGCGATGGATCTTCATTTATGGCCAGTCCTTCATCAAGAGAGCTAGATTCGTCCAATGAAGCATCATTAAGTAGCGGGGTTGGAAGTTCATCTGAAGAAACTTCAGACTGTGGAGGGAAAGAATCTGGTTTGAGTGAGTTTGCTACAGGCAAGGAAGATTTAAAGAAACCATCAAATGAATCCAAAAGTACCCCCTATGCAGAGAAGATCAGAGTGAAGGATTCTTCCGGAAGAACTAACTATCCATACACGCATGGACGATCTCCTTCTTGGACTGAGGGCATCAGTTCCCCTGCAGCACGTAGAATGAAAGTCAAAGATGTTTCCCAATACATGATTGATGCTGCTAAGGAGAATCCTAACTTGGCTCAAAAACTTCATGACGTTTTACTTGAAAGT 1458 0.4403 MKNILKKLHIMSNQSDDAQGATSSKSTKSSDGSSSTTPKKLSNWLHSVSNRQSPSPPSPNLARGERMDPSDSVSSGGLDVVSDSARRDSESSASRDPEVEEEYQIQLALELSAKEDPEAVQIEAVKQISLGSCDPDNTPAEVVAYRYWNYNALGYDDKISDGFYDLYGILTETTSARMPSLVDLQGKSTSIDVTWEAVLVNRAADSNLLKLEQEAMKMAASSGKDFEVVVNSNLVHKLAIMVADYMGGSVKDPESMSRAWRSLSYSLKATLGSMVLPLGSLTIGLARHRALLFKVLADSLGIPCRLVKGLQYMGSDDVAMNFVKIDDGREYIVDLMAAPGALIPSDATASHIECDGSSFMASPSSRELDSSNEASLSSGVGSSSEETSDCGGKESGLSEFATGKEDLKKPSNESKSTPYAEKIRVKDSSGRTNYPYTHGRSPSWTEGISSPAARRMKVKDVSQYMIDAAKENPNLAQKLHDVLLES 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1316g00001 486 MobiDBLite consensus disorder prediction 1 101 - -
Vium1316g00001 486 MobiDBLite consensus disorder prediction 430 448 - -
Vium1316g00001 486 MobiDBLite consensus disorder prediction 360 451 - -
Vium1316g00001 486 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 3 9 234 - -
Vium1316g00001 486 MobiDBLite consensus disorder prediction 83 101 - -
Vium1316g00001 486 MobiDBLite consensus disorder prediction 8 59 - -
Vium1316g00001 486 Pfam Ethylene-responsive protein kinase Le-CTR1 140 343 - -
Vium1316g00001 486 MobiDBLite consensus disorder prediction 360 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1316g00001 Vium-Chr1316 10229 14355 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1316g00001 1 486 MAP Kinase Kinase Kinase AT1G73660 59.152 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1316g00001 - - vum:124825789 882.093