Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1315g00001 ATGCAAGCCTCTTTCTCACACTCCTTTCTCTCTAAGATTTTCCTGCTTTTGATCTTGTCATGTTTTGTGGCCACCATTGAAGCTTCTAAGAAGCAGGTCTCAGCCATGTATGTGTTTGGAGACTCCACAGTAGACCCTGGAAACAACAACTTCATAGACTCCGCTTTCAGAAGCAATTTTCCACCATATGGTAGAGATTTTGTTAACCAAGTTCCCACAGGAAGGTTCACCAATGGGAAGCTTGGCACTGATTTTATTGCTTCATATTTAGGCCTAAAAGACTTGTTACCACCATATTTGGATCCGAATCTCAGCGACAAAGAAATCGTAACGGGTGTCAGCTTTGCCTCTGCTGGTTCTGGCTTTGATCCACTAACTCCAACTTTGGGTAATGTGATTTCAATACCAAAGCAATTGGAACATTTTAAAGAATACAAAAAGAGGTTAGAGGGTATGCTTGGTGAGCGAAAAACCGAACATCATATGAACAGTGCTTTCTTTTTCATCAGCGCGGGTACAAATGACTACGTTATTAATTATTTTTCTATGCCGATACGAAGAAACTATACTCCATTAACCTATGGACAGTTCTTGCTTCAGCATGTTAAAGATTTCATACAGAATTTATGGAAAGAAGGTGCAAGAAAAATAGCTTTGGTTGGACTACCTCCAATGGGGTGCTTACCGATCGTGATCACATTGAATTCCCATAATGTGATTTTCGAGCGTGGCTGTGTAGACAAGTATTCAGCTGTTGCGAGACATTACAATATGATGCTTCAACATGAATTGTTCTTAATGCAACTAAACTTCTCCAATGTTCCTCTGGGTGCCAAAATCTCCTACATCGACATATATGAACCCTTGAACAATATGATCCAATCGCATGAAAATTTTGGTTTTGATGAAGTTGATCATGGTTGCTGTGGAAGCGGTTACATCGAAACAACCTTTATGTGTAATGGGTTTTCATTCGTCTGCTCTGATCCATCAAAGTTTGTCTTCTGGGATTCAATACACCCTACGGAAAAGGCATACTTTCGCCTATTTATGGTAGCTCGTCCCAACATCGATGCCCTAATTAACGCCTAG 1092 0.4038 MQASFSHSFLSKIFLLLILSCFVATIEASKKQVSAMYVFGDSTVDPGNNNFIDSAFRSNFPPYGRDFVNQVPTGRFTNGKLGTDFIASYLGLKDLLPPYLDPNLSDKEIVTGVSFASAGSGFDPLTPTLGNVISIPKQLEHFKEYKKRLEGMLGERKTEHHMNSAFFFISAGTNDYVINYFSMPIRRNYTPLTYGQFLLQHVKDFIQNLWKEGARKIALVGLPPMGCLPIVITLNSHNVIFERGCVDKYSAVARHYNMMLQHELFLMQLNFSNVPLGAKISYIDIYEPLNNMIQSHENFGFDEVDHGCCGSGYIETTFMCNGFSFVCSDPSKFVFWDSIHPTEKAYFRLFMVARPNIDALINA 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1315g00001 363 Gene3D SGNH hydrolase 22 354 IPR036514 -
Vium1315g00001 363 PANTHER GDSL ESTERASE/LIPASE EXL3 18 346 - -
Vium1315g00001 363 Pfam GDSL-like Lipase/Acylhydrolase 37 347 IPR001087 GO:0016788
Vium1315g00001 363 SUPERFAMILY SGNH hydrolase 162 349 - -
Vium1315g00001 363 CDD SGNH_plant_lipase_like 35 346 IPR035669 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1315g00001 Vium-Chr1315 23108 26224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1315g00001 11 346 Pollen Coat Proteome AT1G75910 35.673 5.00e-62 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1315g00001 - - gmx:100804919 607.06