Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1313g00003 ATGAAAGACAGGGCAGTGAAGTTCAGAGCCACCCTGGAAAATTTGCATTCTATCCTCAAAAAAGTAGAACCGATGGCTAGGGAGATAGATGGTCTTAACAAGCGATTGGATAAACCAGCTACAGAAACGCAGAAGCTGATCGATGAGATGGAGAAGGGGAAGGAGCTTGTTATTGAGTGCTCCAAAGTTGATTGGTGGAATTGCTGTTATAAGGCCAGTTCCCAAGAGAAACTTCAAGACTTGATCGATTCTATTACTCTGTACTTTCAATTGGATATGCAAGGAAATATAAATGTCATTGTGCTGGAGAACCAGATGCTGCTGCATCAGATTCACGAGAAGCTTGTGGAGAATGTTCCGAGAAGGATTGCAGGCTTGTGCTCTCCACCTGAACCCCCAGCTTTCACTGTTGGGCTGGATGTTCATTTGAGGGCGTTGAAGTTCAAGTTGCTGGAGAATCATCATGAGGGGTCGGTGCTCACGGTAACTGGAGCAGGAGGTTCGGGAAAGTCAACGTTGGCCAAGAAGTTTTGTTCTGATGAGGAAGTTAATGGTAAATTCAAGGACAACATATTCTTCATCTCCTTAGTGGAATCGCCCAAGTTGAGCACCATAGTGGAGAGACTGTTTGAACACAATGGTTACGAGAAGCCACAGTTTCAAAGTGATGAGGGTGCAGTTAATCGATTGGAAAATTTGCTAAAACAGATTGGAAAAAAACCCATATTATTGGTCCTGGACGGTGTTTTGCCAGAGTCAGCATCCGTAGTTGAGAAATTCGTGTTTCAGATCCCAAACTACAAGATTTTAGTGACATCAAGATTCACAATTAAAGGATTTGGGCAGCCATACATGTTGAAATCACTGAATGAAGCTGATGCTTTACACTTATTTCGCCACTCTGCATCCCTGGACCAGACCAGCTCTAATATTCCCGATACTATTGTGCAGAAGATAGCAAAAGGGTGCAGTGGTTCTCCCTTGGCACTTATAGTAACAGGAAAATCTTTAAGTCTTGAAGAACCAGTGGTTTGGCACAACAGGGCGAGGATATTGTCGAGGGGTCACTCTGTTCTTTATTATAGTTCTAGTAGCGATGGGCTTCTTACTTGCCTCCAAAAAAGCTTTGATGACTTGGATGCTAAGCTTGCTGAGAGTTTTATGGACCTGAGCTTATTTCCTGAAGCACAGAAGATACCCGCAGCAGCACTTGTTGATATTTATGCAGAACAGCGTGATGAAGACGATGACATTGCAATGGAGAATATCCATGACCTCGTCAAAAGGAACGTGGCTGATCTTGTTGTCACAAGGAATACTACGAGTGGAACAGTTGACTACAATTACCACTATGTTACGCAGCATGGTCTTCTTCGGGACCTAGCCATCCATCAAACAAGAAATTTGCCGACTGAGAAGAAGCATAGGCTAATAATTGACCTCAGAGGGAACAATATCCCCAAATGGTGGACTACACAGAATGAGTATCACATTGCAGCCCACTCATTATCCATATCAACTGATGAAGAATTCACTTCAGAGTGGTGCAACTTGCAGCCAAATGAGGTCAAGGTTCTAGTGATGAACCTTAGAGAAAAAAAGCGCTCTCTACCACCGTTCATGAAGAAAATGAATAAATTAAAAGTCCTGACAATAACGAATTATGACGTCAATCGTGCTGAGTTGGAGAATTTAGAGCTGCTTGATTATCTTTCTGATCTCAAAAGAATCAGGTTAGAGAAGGTTTCAATTCCTTTCCTTAGCAAGACTGGAGTGCCACTGAAGAATCTGCACAAGTTCTCTTTCTTTATGTGCAATGTGAACGAAGCCTTCAAAAACAGCACCATCAAAGTTTCTGATGTGCTTCCAAATTTGAAGGAGATGAACATTGATTACTGTGATATGGAGGAATTGCCGGCTGGACTCTCCGATACTGTTTCCCTAAAGAAGCTAAGCATCACAAACTGCCATAAACTTTCAAAACTTCCTACAGGAATTGGAAAGTTGGTGAATTTGGAATCATTGAGGCTTACTTCTTGTACAAAATTAGAAGAGTTGCCAGACAGCATCACAAGCCTTCATAAACTGAACTTTCTTGACATTTCTGACTGTGTAAGTCTTAGGATGTTACCAGAAAACATAGGGGAGCTGGGTAGTTTAGAAAGGTTGAATTGCAGAGGTTGCAACAGATTGTCTGAATTGCCATACTCAGTGAAGGACCTTGAGAGCTTAAGAGTGGTAGTATGCGATGAAGAGAGGGCTGCATTATGGGAACCTATCAGATCCATGTTTAGTGATCTAAAGCTAGAGGTAGTCCTAACCGATTTCAAACTAGATCCTCTTTTATAA 2349 0.4215 MKDRAVKFRATLENLHSILKKVEPMAREIDGLNKRLDKPATETQKLIDEMEKGKELVIECSKVDWWNCCYKASSQEKLQDLIDSITLYFQLDMQGNINVIVLENQMLLHQIHEKLVENVPRRIAGLCSPPEPPAFTVGLDVHLRALKFKLLENHHEGSVLTVTGAGGSGKSTLAKKFCSDEEVNGKFKDNIFFISLVESPKLSTIVERLFEHNGYEKPQFQSDEGAVNRLENLLKQIGKKPILLVLDGVLPESASVVEKFVFQIPNYKILVTSRFTIKGFGQPYMLKSLNEADALHLFRHSASLDQTSSNIPDTIVQKIAKGCSGSPLALIVTGKSLSLEEPVVWHNRARILSRGHSVLYYSSSSDGLLTCLQKSFDDLDAKLAESFMDLSLFPEAQKIPAAALVDIYAEQRDEDDDIAMENIHDLVKRNVADLVVTRNTTSGTVDYNYHYVTQHGLLRDLAIHQTRNLPTEKKHRLIIDLRGNNIPKWWTTQNEYHIAAHSLSISTDEEFTSEWCNLQPNEVKVLVMNLREKKRSLPPFMKKMNKLKVLTITNYDVNRAELENLELLDYLSDLKRIRLEKVSIPFLSKTGVPLKNLHKFSFFMCNVNEAFKNSTIKVSDVLPNLKEMNIDYCDMEELPAGLSDTVSLKKLSITNCHKLSKLPTGIGKLVNLESLRLTSCTKLEELPDSITSLHKLNFLDISDCVSLRMLPENIGELGSLERLNCRGCNRLSELPYSVKDLESLRVVVCDEERAALWEPIRSMFSDLKLEVVLTDFKLDPLL 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1313g00003 782 Gene3D - 114 278 IPR027417 -
Vium1313g00003 782 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 2 96 IPR008808 -
Vium1313g00003 782 Gene3D - 376 465 IPR036388 -
Vium1313g00003 782 SUPERFAMILY RNI-like 534 747 - -
Vium1313g00003 782 PRINTS Disease resistance protein signature 159 174 - -
Vium1313g00003 782 PRINTS Disease resistance protein signature 236 250 - -
Vium1313g00003 782 PRINTS Disease resistance protein signature 691 707 - -
Vium1313g00003 782 PRINTS Disease resistance protein signature 323 337 - -
Vium1313g00003 782 ProSiteProfiles RPW8 domain profile. 1 127 IPR008808 -
Vium1313g00003 782 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 2 778 IPR039203 GO:0050832
Vium1313g00003 782 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 390 IPR027417 -
Vium1313g00003 782 Gene3D - 288 375 IPR042197 -
Vium1313g00003 782 Pfam NB-ARC domain 142 353 IPR002182 GO:0043531
Vium1313g00003 782 Gene3D Ribonuclease Inhibitor 471 763 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1313g00003 Vium-Chr1313 35353 38986 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1313g00003 628 747 WRKY Transcription Factor Family AT4G12020 32.231 8.46e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1313g00003 - - vra:106755496 1278.46