Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1313g00002 ATGGCTATGGTTCTGGATGCTGTTATTGGACAAGTGCTTGATGAACTGCTGAGCACTGTTATTGCAATGAAAGACAGGGCAGTGAAGTTCAGAGCCACCCTGGAAAATTTGCATTCTATCCTCAAAAAAGTAGAACCGATGGCTAGGGAGATAGATGGTCTTAACAAGCGATTGGATAAACCAGCTACAGAAACGCAGAAGCTGATCGATGAGATGGAGAAGGGGAAGGAGCTTGTTATTGAGTGCTCCAAAGTTGATTGGTGGAATTGCTGTTATAAGGCCAGTTCCCAAGAGAAACTTCAAGACGTGATCGATTCTATTACTCGGTACTTTCAATTGGATATGCAAGGAAATATAAATGTCATTGTATTGGAGAACCAGCAGCTGCTGAAGAAGCTTGTGGAGAGTGTTCCGAGAAGGATTGCAGGCTTGTGCTCTCCACCTGAACCCCCAGCTTTCACTGTTGGGCTGGATGTTCATTTGGGGGCGTTGAAGTTCAAGTTGCTGGAGAATCATCATGAGGGGTCGGTGCTCACGGTAACTGGAGCAGGAGGTTCGGGAAAGTCAACGTTGGCCAAGAAGTTTTGTTCTGATGAGGAAGTTAATGGTAAATTCAAGGACAACATATTCTTCATCTCCTTAGTGGAATCGCCCAAGTTGAGCACCATAGTGGAGAGACTGTTTGAACACAATGGTTACGAGAAGCCACAGTTTCAAAGTGATGAGGGTGCAGTTTATCGATTGGAAAATTTGCTAAAACAGATTGGAAAAAAACCCATATTATTGGTCCTGGACGGTGTTTTGCCAGAGTCAGCATCCGTAGTTGAGAAATTCGTGTTTCAGATCCCAAACTACAAGATTTTAGTGACATCAAGATTCACAATTAAAGGATTTGGGCAGCCATACTTGTTGAAATCACTGAATGAAGCTGATGCTTTACACTTATTTCGCCACTCTGCATCCCTGGACCAGACCAGCTCTAATATTCCCGATACTATTGTGCAGAAGATAGCAAAAGGGTGCAGTGGTTCTCCCTTGGCACTTATAGTAACTGGAAAATCTTTAAGTCTTGAAGAACCAGTGGTTTGGCACAACAGGGCGAGGATATTGTCGAGGGGTCACTCTGTTCTTTATTATAGTTCTAGTAGCGATGGGCTTCTTACTTGCCTCCAAAAAAGCTTTGATGACTTGGATGCTAAGCTTGCTGAGAGTTTTATGGACCTGAGCTTATTTCCTGAAGCACAGAAGATACCCGCAGCAGCACTTGTTGATATTTATGCAGAACAGCGTGATGAAGACGATGACATTGCAATGGAGAATATCCATGACCTCGTCAAAAGGAACGTGGCTGATCTTGTTGTCACAAGGAATACTACGAGTGGAACAGTTGACTACAATTACCACTATGTTACGCAGCATGGTCTTCTTCGGGACCTAGCCATCCATCAAACAAGAAATTTGCCGACTGAGAAGAAGCATAGGCTAATAATTGACCTCAGAGGGAACAATATCCCCAAATGGTGGACTACACAGAATGAGTATCACATTGCAGCCCACTCATTATCCATATCAACTGATGAAGAATTCACTTCAGAGTGGTGCAACTTGCAGCCAAATGAGGTCAAGGTTCTAGTGATGAACCTTAGAGAAAAAAAGCGCTCTCTACCACCGTTCATGAAGAAAATGAATAAATTAAAAGTCCTGACAATAACGAATTATGACGTCAATCGTGCTGAGTTGGAGAATTTAGAGCTGCTTGATTATCTTTCTGATCTCAAAAGAATCAGGTTAGAGAAGGTTTCAATTCCTTTCCTTAGCAAGACTGGAGTGCCACTGAAGAATCTGCACAAGTTCTCTTTCTTTATGTGCAATGTGAACGAAGCCTTCAAAAACAGCACCATCAAAGTTTCTGATGTGCTTCCAAATTTGAAGGAGATGAACATTGATTACTGTGATATGGAGGAATTGCCGGCTGGACTCTCCGATACTGTTTCCCTAAAGAAGCTAAGCATCACAAACTGCCATAAACTTTCAAAACTTCCTACAGGAATTGGAAAGTTGGTGAATTTGGAATCATTGAGGCTTACTTCTTGTACCAAATTAGAAGAGTTGCCAGACAGCATCACAAGCCTTCATAAACTGAACTTTCTTGACATTTCTGACTGTGTAAGTCTTAGGATGTTACCAGAAAACATAGGGGAGCTGGGTAGTTTAGAAAGGTTGAATTGCAGAGGTTGCAACAGATTGTCTGAATTGCCATACTCAGTGAAGGACCTTGAGAGCTTAAGAGTGGTAGTATGCGATGAAGAGAGGGCTGCATTATGGGAACCTATCAGATCCATGTTTAGTGATCTAAAGCTAGAGGTAGTCCTAACCGATTTCAAACTAGATCCTCTTTTATAA 2403 0.4232 MAMVLDAVIGQVLDELLSTVIAMKDRAVKFRATLENLHSILKKVEPMAREIDGLNKRLDKPATETQKLIDEMEKGKELVIECSKVDWWNCCYKASSQEKLQDVIDSITRYFQLDMQGNINVIVLENQQLLKKLVESVPRRIAGLCSPPEPPAFTVGLDVHLGALKFKLLENHHEGSVLTVTGAGGSGKSTLAKKFCSDEEVNGKFKDNIFFISLVESPKLSTIVERLFEHNGYEKPQFQSDEGAVYRLENLLKQIGKKPILLVLDGVLPESASVVEKFVFQIPNYKILVTSRFTIKGFGQPYLLKSLNEADALHLFRHSASLDQTSSNIPDTIVQKIAKGCSGSPLALIVTGKSLSLEEPVVWHNRARILSRGHSVLYYSSSSDGLLTCLQKSFDDLDAKLAESFMDLSLFPEAQKIPAAALVDIYAEQRDEDDDIAMENIHDLVKRNVADLVVTRNTTSGTVDYNYHYVTQHGLLRDLAIHQTRNLPTEKKHRLIIDLRGNNIPKWWTTQNEYHIAAHSLSISTDEEFTSEWCNLQPNEVKVLVMNLREKKRSLPPFMKKMNKLKVLTITNYDVNRAELENLELLDYLSDLKRIRLEKVSIPFLSKTGVPLKNLHKFSFFMCNVNEAFKNSTIKVSDVLPNLKEMNIDYCDMEELPAGLSDTVSLKKLSITNCHKLSKLPTGIGKLVNLESLRLTSCTKLEELPDSITSLHKLNFLDISDCVSLRMLPENIGELGSLERLNCRGCNRLSELPYSVKDLESLRVVVCDEERAALWEPIRSMFSDLKLEVVLTDFKLDPLL 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1313g00002 800 Gene3D - 306 393 IPR042197 -
Vium1313g00002 800 Gene3D - 134 296 IPR027417 -
Vium1313g00002 800 Gene3D - 394 483 IPR036388 -
Vium1313g00002 800 Gene3D Ribonuclease Inhibitor 489 781 IPR032675 -
Vium1313g00002 800 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 2 796 IPR039203 GO:0050832
Vium1313g00002 800 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 7 119 IPR008808 -
Vium1313g00002 800 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 408 IPR027417 -
Vium1313g00002 800 PRINTS Disease resistance protein signature 341 355 - -
Vium1313g00002 800 PRINTS Disease resistance protein signature 177 192 - -
Vium1313g00002 800 PRINTS Disease resistance protein signature 254 268 - -
Vium1313g00002 800 PRINTS Disease resistance protein signature 709 725 - -
Vium1313g00002 800 SUPERFAMILY RNI-like 552 765 - -
Vium1313g00002 800 ProSiteProfiles RPW8 domain profile. 1 149 IPR008808 -
Vium1313g00002 800 Pfam NB-ARC domain 160 371 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1313g00002 Vium-Chr1313 28149 32127 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1313g00002 646 765 WRKY Transcription Factor Family AT4G12020 32.231 7.12e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1313g00002 - - vra:106755496 1285.01