Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13121g00001 ATGCATTCAATGGCTTCTTCCTTATGCAACATCTTCCTCTTACTTTGTTTGCTTAAGGTTCTGGCCTCCATAGGGCCATACCCAGTTGCAGTTCATTCAGATGGTGATGCTCCGATTAATGTGACAAAGCACTTTTCCTTCTACAATTTCAGCTTCAGCAACAACCCCAGACTAGTCCATGATGTGAAGCTTCTTGGCAGTGCTAAGTTCTCAGATGAAAAGGGTTCTCTTCAAATCCCAGATGAGTCACAATACACAGACATAAGACACCAAGCTGGTAGAGGGATCTATTCCTTCCCAATTCGCCTGCTAGATCCAACCACCAAGACCCCAGCTTCCTTTCAAACAACTTTCTCTTTTCAACTCAACAATTCCACTGCCTCTGAGCAAGCTGCATATGGGGGTAGTGGCCTCACTTTCATCATTGTCCCTGATGAGTTCACTGTGGGAAGGCCCGGGCCATGGCTTGGCATGCTCAATGATGCTTGTGAAAATGACTACAAGGCAGTGGCCGTGGAGTTTGACACAAGACAGAACCCAGAGTTTGGAGATCCTAATGACAACCATGTTGGCATCAACTTAGGTACCATAGTATCTACCAAAGTTATCAATGTTTCTGACGTTGGTGTTTCCCTTAAGGATGGTTTTGTTCACCGCGCTTGGATCACCTATGATGGTCCTCAGAGGAGAATGGACATTCGTCTTGGAAGAGCCAATGAAGAGGATTATCCTTCCACGCCTATCTTCTCAGAATCTGTGGATCTCTCTCCTTATCTGAATGAGTACATGTTTGTGGGGTTCTCAGCTTCCACTGGTAACCATACACAAATCCACAACATACTCTCTTGGAACTTCACTTCTGTAAGCCAAGCTTTTCTGCGCTTCCCTTCATCTGAAACCTGCCAGGGTAAGATCTTACTTGAGAATAGTACAGCAGCACCAACTACTGAGAAGTCTTCTAAGAATGAGCCACCAAGAAGCTTTTTGATTTTTATGGCATCTGTGGCATTGGCTCTGGCTCTTTTCCTTGGCTTTTACTTCATCAGCAGGCACAGGAGAAATGCTTCCAAGATAAAGACTTCAGTGGAGACAGAGATTCACTTGCCAAGGCCTCCAAACAAACCACGCCGCTTCACATTTTCTCAACTTTCATCTTCAACTCGGTCATTCAGTGAGATAGAGTTGCTTGGCAGTGATTCTAGAGGAGAATACTACAGAGGAAAGCTTTCTAATGGAAGCCAGGTGGCTGTGAAAAGGTTCTCAACTCAGTTTCTCCACACACATGGATCAGACAAGAAGCGTTTGCTGAAGGAAATCAAAGTCATTGGCCATGTTCGCCACCCGAATTTGCTTCCTGTCAGAGGGTGGTGTCAAGACAACCATGAAATCATGGTGGTCTATGACTTTGTTCCCAATGGCAGCCTAGACAAATGGTTATTTGGGGCTGGTGTTCTTCCATGGACTAGGAGATTAAAAGTTATTAAGGATGTAGCTGATGGCTTGAGCTTCCTCCACACTAAGCACCTAGCCCACAAGAACTTGAAATGCAGCAGTGTGTTTCTAGATGTCAACTTCAGAGCTGTTTTGGGTGATTTTGGCTTTGTGCTGTTGGGGGCAGAATCAAAACAGTTTGAGTCAGCAGTGTGCCATGGTGCAGACGTGTTTGAGTTTGGTGTCCTTGTGTTGGAAGTGATAGCTGGAAGGGTAAGGGATGAGAAAGAGGAGGGAAATCCAGAAGAGAGGAACCTATTGGATTATGCTTGGAACTTGCATCAGATTGATGAGAAAGTTAAGCTTGTGGACAGAAGGATGGGATCATTGATCAACTTGGAGCAGGCAATTCGTGTTCTCGAAATCGGGTTGCTTTGCACCTTAAATGAGAACAAAGGAAGACCCTCAATGGAGCAAGTGGTGGAGTTTTTTCTGAACATGGATAAGCCTATTCCTGAACTGCCAAGAACTCGCCCTGTTTCCTTGTTCCCCTATAATAGCGCCAACACAGGACTTTGCAATACATATTCTTGCACTTTTTAG 2034 0.4499 MHSMASSLCNIFLLLCLLKVLASIGPYPVAVHSDGDAPINVTKHFSFYNFSFSNNPRLVHDVKLLGSAKFSDEKGSLQIPDESQYTDIRHQAGRGIYSFPIRLLDPTTKTPASFQTTFSFQLNNSTASEQAAYGGSGLTFIIVPDEFTVGRPGPWLGMLNDACENDYKAVAVEFDTRQNPEFGDPNDNHVGINLGTIVSTKVINVSDVGVSLKDGFVHRAWITYDGPQRRMDIRLGRANEEDYPSTPIFSESVDLSPYLNEYMFVGFSASTGNHTQIHNILSWNFTSVSQAFLRFPSSETCQGKILLENSTAAPTTEKSSKNEPPRSFLIFMASVALALALFLGFYFISRHRRNASKIKTSVETEIHLPRPPNKPRRFTFSQLSSSTRSFSEIELLGSDSRGEYYRGKLSNGSQVAVKRFSTQFLHTHGSDKKRLLKEIKVIGHVRHPNLLPVRGWCQDNHEIMVVYDFVPNGSLDKWLFGAGVLPWTRRLKVIKDVADGLSFLHTKHLAHKNLKCSSVFLDVNFRAVLGDFGFVLLGAESKQFESAVCHGADVFEFGVLVLEVIAGRVRDEKEEGNPEERNLLDYAWNLHQIDEKVKLVDRRMGSLINLEQAIRVLEIGLLCTLNENKGRPSMEQVVEFFLNMDKPIPELPRTRPVSLFPYNSANTGLCNTYSCTF 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13121g00001 677 FunFam Putative L-type lectin-domain containing receptor kinase S.7 isoform A 42 295 - -
Vium13121g00001 677 Pfam Protein tyrosine and serine/threonine kinase 394 535 IPR001245 GO:0004672|GO:0006468
Vium13121g00001 677 SUPERFAMILY Concanavalin A-like lectins/glucanases 46 287 IPR013320 -
Vium13121g00001 677 PANTHER - 81 643 - -
Vium13121g00001 677 ProSiteProfiles Protein kinase domain profile. 390 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13121g00001 677 FunFam Putative L-type lectin-domain containing receptor kinase S.7 isoform A 352 469 - -
Vium13121g00001 677 Gene3D - 42 294 - -
Vium13121g00001 677 SUPERFAMILY Protein kinase-like (PK-like) 372 659 IPR011009 -
Vium13121g00001 677 Pfam Legume lectin domain 44 290 IPR001220 GO:0030246
Vium13121g00001 677 FunFam Lectin-domain containing receptor kinase A4.2 470 649 - -
Vium13121g00001 677 CDD lectin_legume_LecRK_Arcelin_ConA 44 287 IPR001220 GO:0030246
Vium13121g00001 677 ProSitePatterns Legume lectins beta-chain signature. 170 176 IPR019825 -
Vium13121g00001 677 Gene3D Phosphorylase Kinase; domain 1 349 469 - -
Vium13121g00001 677 Gene3D Transferase(Phosphotransferase) domain 1 549 648 - -
Vium13121g00001 677 Gene3D Transferase(Phosphotransferase) domain 1 470 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13121g00001 Vium-Chr13121 1725 4519 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13121g00001 7 660 Receptor kinase-like Gene Family AT5G55830 31.214 1.70e-95 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium13121g00001 Lectin_legB 1.1e-56 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13121g00001 - - gmx:100781464 1187.56