Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13112g00001 ATGGCCCTATGTATGGTGGGAGAGGCTCTTATCTCTGCTTGTGTGGAGATCTTGATAAAAAGGATAGCTTCAAGAGAGTTTAGAGATTTCTTCTCCAGTAGAAAGCTGAATATTTCTTTGCTGGATGAGTTGAAGACAAAGCTATTGGTACTTAATGCTGTGCTCAATGATGCTGAGGAGAAGCAGATCACTGATTCTGCAGTGAAGCAGTGGCTTGATGAGTTTAGAGATGTTATCTTAGATGCAGAAGATTTGTTGGATGAAATCAACACACATGCTTTGAGATGCAAAGGGGAAGGCAAATCTAGAAAATTTGCCACCAAGGTAAGATCTTTGCTTTCTTCTCGCTTTAAAAACTTCTATAGGGGTATGAATTCCAAGTTTGAAGCAATATCTAGAAGGCTAGAACAGTTTGTTAGACAAAAAGATATTCTTGGCTTGCAAAGTGTTTCTAGGAGAGTGTCTTATAGAGCAGTAACAGATTCACTGGTTGATTCTGTTGTGGTTGCTAGAGAGAATGACAGGGAAAGGCTACTTAGCATGCTTCTATGTGATGATGGTGATGGCATGTCTAATGATGTAGAAGTGATCACGGTATTGGGCATGGGGGGTCTGGGAAAAACAACCCTCGTTCAATGCCTTTACAATGATTGTGAAGTGCAGAGTCATTTTGATATGACAGCTTGGGCGTGTGTGTCAGATGATTTTGATATTCTCAAGGTAACGAAGAAAATTGTAGAATCTCTCACATCGAAAGATTGTGACATTACTAATCTTGATGTTCTTCGTGTTGAATTGAAGAATAACCTAAGAGATAAGAAATTTTTGCTTGTGCTTGATGACCTTTGGAATGAAAAGTATAACGATTGGCATAACCTAATAGCACCTTTTAGAAGTGGGAGAAAGGGAAGTAAAATCATTATTACAACCAGACAACAAAGAGTTGCACAGGTCACACATACATTTCCTACTTACGAGCTGAAACCTCTTAGTGATGAAAATTGTTGGATCATACTGGCCAGACATGCATTTGGAAGTGAAAACTTCCATAATTATCCAATCTTAGAAGAAGTTGGGAAAAAAATTGCAAGAAAATGTAATGGTCTGCCATTGGCAGCTAAAACATTGGGAGGCCTTTTGAGATCAAATGTTGATGTTGGGGAATGGAATAGAATTCTGAACAGCAATATGTGGGCACATGATGATGTTTTACCAGCTTTGCGCATAAGTTATTTTCATCTTCCAGCACATTTGAAGAGATGTTTTGCTTATTGCTCCATTTTTCCAAAACAACATTTGTTGGATAGAAAGGAATTAATTTTGTTATGGATGGCTGAAGGCTTTCTTCAACACATTCATGAAGACGAAGAAATGGAATCAGTGGGAAATGACTGTTTCAATGAGTTATTATCTAGATCCTTAATTCAAAAAGAGAATGCTGTTGCAGAGGAAAATTTTCGAATGCATGACCTCATCTATGATTTAGCTAGACTTGTGTCTGGAAGAAGTTCTTACCACTTTGATGGCAGTGAAATCCCAAGAACCGTTCGCCATATATCATTTCTCAGAGAGATGTTTGATATCTCTGAAAAATTTGAGGGCTTGTATGAGCTGAAGTGTTTGCGGACCTTTCTACCACGATTGTCATATCCATTTGTTCAATGTTACTTGACCAAAATGGTATCACATGGTTGGCTGCCAAAACTAAGATGTTTGCGAATACTTTCGTTGTCTAAATACACAAACATCACTGAGTTGCCTAATTCGATTGGCAATTTGTTGCACTTGAGGTATCTGGATCTTTCCTACACCTCAATTGAAAGCTTGCCCGATGAAACATTTATGCTTTACAATTTGCAAACTTTGATATTATCAAATTGTGAATCTCTTATTCAATTGCCGCAGAAGATAGGAAATCTGACTAACTTACGCCACCTTGACATCAGTGACACTAATTTGACAGAGATGCCAACACAAATATGCAACTTACAAGAACTCCGTACCTTGACAGTTTTTATTGTTGGAAGACAAGATGGACTAAGTATCAGAGATTTATCCAAATTTCCCTATCTTCAGGGCAAGCTTTCCATCATGAACCTGCAAAATGTCGTCAATCTTGTGGACGTTTTCGGGGCCAATTTAAATAAAAAAGAGCAGATCGAGGAGCTTATTCTAGGATGGGGCAGTGATCCACAAGAGCCGCAGTTTGAAAAGGATGTACTTGACAACTTGCAGCCATCAACAAATTTGAAGAAACTCAGTGTCAAATACTATGGTGGCACTTCCTTTCCAAATTGGATTGGAAATTTTTCATTTTCCAAGATCACAGTTCTTACTGTAAGTGACTGCAACAATTGTTTGTCACTTCCACCGTTTGGACAACTACCTTCTCTGAAGGAGCTTGTTATCAAAAGGATGAAAATGGTGAAGAAAGTTGGTCATGAGTTCTATGGCAGCAATGTAGACTCACAGTTGTTTCAGCCATTTCAATCACTGGAGAATCTGGAATTTGAAGATATGTCAGAGTGGCAGGAATGGCTACCATGTGAGAGTGAAGGAAGAAACTTTATTTTTCCATGTCTTAAGACTTTGTACCTCTGCAAGTGCCCCAAGCTGAGAGGAACCTTGCCAACTCATCTACCTTCATTGACAAATGTGATTTTCTCAGAGTGCAACCAGCTGGTGACAGAATTATCTGATGTGCATTGGAATAAATCAATTGAAGCAATACATATTGCAGAGGGACAAGAAGCCTTGTTGTCTATGCTTGACAACTTCTCCTATTGTGAGCTATTGATTGAAAAGTGTGATAGCTTACTATGTTTGCCCAGAATGCTACTTGCTGCAAATTGTCTTCAAAAGTTGACTCTTACAAATATCCCATCTTTGATTTACTTCCCAGCTGATTGTTTGCTCACATCATTGCGATCACTTGAAATTTGGCATTGTAGAAACTTAGAGTTCATATCTCACAATACATGTCCAAAATTCACATCACTTGAAACACTGAGAATATGGAATAGTTGCTGCTCCATGACATGTTTTTCATTAGGTTGTTTACCTGTCCTTCAAGAGCTTAATATCCGTTTTATTCCCAACTTGGCAGCAATTACTACTCAAGGAGGAGAAGCAGCTCCGAAATTAGTTGATTTTATTGTCACTGATTGTGAGAAACTCAGATCACTTCCAAATCAAATTGATCTCCCTTCCCTTGAACACTTGGATCTATCTGGGCTTCCCATGCTAGAATCATTGTCTCCAAGGTGTTTGCCTTCTTGTTTAAGATCACTTCATGTTGATGTTGGCATACTATCATCTGTATCCAAAAAAGAGTTAAGTGTTCTATTCCAACGCCTATCTTCTCTGTCACATCTTCTACTCAAGGGTCTTGGTGAAGAAGATCTTGTTAACACTCTTCTGAAGCAGCAGTCCCTGCCTACTTCCCTAGAATATATGTTCCTTCATAATTTCAGTGACTTAAAGTTGTTGGAAGGAAAAGGGCTTCAAAATCTCACTTCTCTCCAAATGCTTCAAATGTATAACTGTCCTAGTATTGAGTCCTTACCAGAGGGTCAACTTCCACACTCTCTTCAAGTACTCAGTCTTAGGGAGTGCCCTTTACTGGAAGCAAGATATCAAAATCATAATGGGAAATACTGGTATAAAATTGCTCACATTCCTGCAATCAAGATAAATGAAAAAGTCATAATATGA 3714 0.3848 MALCMVGEALISACVEILIKRIASREFRDFFSSRKLNISLLDELKTKLLVLNAVLNDAEEKQITDSAVKQWLDEFRDVILDAEDLLDEINTHALRCKGEGKSRKFATKVRSLLSSRFKNFYRGMNSKFEAISRRLEQFVRQKDILGLQSVSRRVSYRAVTDSLVDSVVVARENDRERLLSMLLCDDGDGMSNDVEVITVLGMGGLGKTTLVQCLYNDCEVQSHFDMTAWACVSDDFDILKVTKKIVESLTSKDCDITNLDVLRVELKNNLRDKKFLLVLDDLWNEKYNDWHNLIAPFRSGRKGSKIIITTRQQRVAQVTHTFPTYELKPLSDENCWIILARHAFGSENFHNYPILEEVGKKIARKCNGLPLAAKTLGGLLRSNVDVGEWNRILNSNMWAHDDVLPALRISYFHLPAHLKRCFAYCSIFPKQHLLDRKELILLWMAEGFLQHIHEDEEMESVGNDCFNELLSRSLIQKENAVAEENFRMHDLIYDLARLVSGRSSYHFDGSEIPRTVRHISFLREMFDISEKFEGLYELKCLRTFLPRLSYPFVQCYLTKMVSHGWLPKLRCLRILSLSKYTNITELPNSIGNLLHLRYLDLSYTSIESLPDETFMLYNLQTLILSNCESLIQLPQKIGNLTNLRHLDISDTNLTEMPTQICNLQELRTLTVFIVGRQDGLSIRDLSKFPYLQGKLSIMNLQNVVNLVDVFGANLNKKEQIEELILGWGSDPQEPQFEKDVLDNLQPSTNLKKLSVKYYGGTSFPNWIGNFSFSKITVLTVSDCNNCLSLPPFGQLPSLKELVIKRMKMVKKVGHEFYGSNVDSQLFQPFQSLENLEFEDMSEWQEWLPCESEGRNFIFPCLKTLYLCKCPKLRGTLPTHLPSLTNVIFSECNQLVTELSDVHWNKSIEAIHIAEGQEALLSMLDNFSYCELLIEKCDSLLCLPRMLLAANCLQKLTLTNIPSLIYFPADCLLTSLRSLEIWHCRNLEFISHNTCPKFTSLETLRIWNSCCSMTCFSLGCLPVLQELNIRFIPNLAAITTQGGEAAPKLVDFIVTDCEKLRSLPNQIDLPSLEHLDLSGLPMLESLSPRCLPSCLRSLHVDVGILSSVSKKELSVLFQRLSSLSHLLLKGLGEEDLVNTLLKQQSLPTSLEYMFLHNFSDLKLLEGKGLQNLTSLQMLQMYNCPSIESLPEGQLPHSLQVLSLRECPLLEARYQNHNGKYWYKIAHIPAIKINEKVII 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13112g00001 1237 Pfam Rx N-terminal domain 11 105 IPR041118 -
Vium13112g00001 1237 SUPERFAMILY L domain-like 931 1224 - -
Vium13112g00001 1237 Gene3D - 39 132 - -
Vium13112g00001 1237 Coils Coil 41 61 - -
Vium13112g00001 1237 Gene3D Ribonuclease Inhibitor 1093 1215 IPR032675 -
Vium13112g00001 1237 SMART LRR_typ_2 640 663 IPR003591 -
Vium13112g00001 1237 SMART LRR_typ_2 1068 1092 IPR003591 -
Vium13112g00001 1237 SMART LRR_typ_2 593 616 IPR003591 -
Vium13112g00001 1237 FunFam Probable disease resistance protein At1g63360 411 498 - -
Vium13112g00001 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 425 IPR027417 -
Vium13112g00001 1237 SUPERFAMILY L domain-like 487 907 - -
Vium13112g00001 1237 Gene3D - 410 498 IPR036388 -
Vium13112g00001 1237 Gene3D - 329 409 IPR042197 -
Vium13112g00001 1237 Gene3D Ribonuclease Inhibitor 933 1092 IPR032675 -
Vium13112g00001 1237 Pfam NB-ARC domain 191 394 IPR002182 GO:0043531
Vium13112g00001 1237 PANTHER DISEASE RESISTANCE PROTEIN RP 42 983 IPR044974 GO:0006952
Vium13112g00001 1237 FunFam Probable disease resistance protein At1g61300 150 321 - -
Vium13112g00001 1237 PRINTS Disease resistance protein signature 366 380 - -
Vium13112g00001 1237 PRINTS Disease resistance protein signature 196 211 - -
Vium13112g00001 1237 PRINTS Disease resistance protein signature 614 630 - -
Vium13112g00001 1237 PRINTS Disease resistance protein signature 269 283 - -
Vium13112g00001 1237 Gene3D Ribonuclease Inhibitor 532 916 IPR032675 -
Vium13112g00001 1237 Pfam Leucine rich repeat 595 653 IPR001611 GO:0005515
Vium13112g00001 1237 ProSiteProfiles Leucine-rich repeat profile. 595 616 IPR001611 GO:0005515
Vium13112g00001 1237 Gene3D - 150 322 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13112g00001 Vium-Chr13112 14090 18023 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13112g00001 193 801 WRKY Transcription Factor Family AT5G45050 21.936 3.63e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13112g00001 - - gmx:100803330 1967.97