Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1310g00006 ATGTTTGGGAGGGCACCAAAGAAGAGCGATAACACACGGTACTACGAAATCCTCGGCGTCTCTAAAAATGCTTCACAGGATGATTTGAAGAAGGCTTACAAAAAAGCCGCCATCAAAAATCACCCCGACAAGGGCGGTGATCCCGAGAAGTTTAAAGAGTTGGCTCAAGCTTATGAGGTTCTGAGTGATCCTGAGAAGCGTGAGATATATGATCAGTATGGTGAAGATGCGCTTAAGGAAGGAATGGGTGGTGGCGGTGGCCATGATCCATTTGATATCTTTTCATCTTTCTTTGGCGGTGGAAGTCCTTTTGGATCAGGTGGTAGTAGTCGTGGTAGGAGACAGAGGCGCGGAGAAGATGTGGTTCACCCTCTCAAGGTCTCTCTGGAGGACCTTTACTTAGGGACTTCAAAGAAGCTGTCCCTCTCCAGAAATGTCATATGCTCCAAGTGCAGTGGGGTTCTAAAGTCTGGGGCTTCGATTGAGTGTGCTGGTTGTCAAGGAACTGGTATGAAGGTTTCTATAAGACACCTTGGTCCATCCATGATTCAACAAATGCAGCATGCTTGCAATGAATGTAAGGGTACTGGAGAAACTATCAATGATAGAGATCGCTGCCCACAATGCAAGGGAGAGAAGGTTGTGCAGGAGAAGAAGGTTCTTGAAGTAATTGTGGAAAAGGGAATGCAGAATGGGCAGAAGATTACATTCCCTGGTGAAGCTGATGAAGCGCCGGACACCATTACTGGGGATATTGTCTTTGTGCTTCAGCAGAAGGAGCATCCTAAATTCAAAAGAAAGAGTGAAGATCTTTTTGTTGAGCACACCTTGTCCCTTACTGAGGCTTTGTGTGGTTTCCAATTTGTCCTGACCCACTTGGATGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTGAAACCTGATTCATACAAGGCTATTAATGACGAGGGGATGCCCATGTACCAGAGGCCATTCATGAAGGGGAAGCTTTATCTTCTCACTGTGGAAATTCCAGATTTTCTAAATCCTGATTCAGGTAAGGCTTTGGAAGCCGTTCTGCCCCCAAGCAGCCTCACAGTTAAAGACATGGAGCTGGACGAATGTGAGGAGACCACACTTCATGATGTCAACATGGATGAGGAGTCTAGGAGGAGGCAGCAACAAGCTGCTCAGGAAGCATATGAGGAGGATGATGATATGCCTGGTGGTGCACAGAGGGTACAGTGCGCCCAACAGTAA 1248 0.4679 MFGRAPKKSDNTRYYEILGVSKNASQDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGHDPFDIFSSFFGGGSPFGSGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGVLKSGASIECAGCQGTGMKVSIRHLGPSMIQQMQHACNECKGTGETINDRDRCPQCKGEKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTITGDIVFVLQQKEHPKFKRKSEDLFVEHTLSLTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDSYKAINDEGMPMYQRPFMKGKLYLHXTVEIPDFLNPDSGKALEAVLPPSSXLTVKDMELDECEETTLHDVNMDEESRRRQQQAAQEAYEEDDDMPGGAQRVQCAQQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1310g00006 417 CDD DnaJ 14 63 IPR001623 -
Vium1310g00006 417 Gene3D - 109 259 - -
Vium1310g00006 417 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Vium1310g00006 417 SUPERFAMILY HSP40/DnaJ peptide-binding domain 264 351 IPR008971 GO:0006457|GO:0051082
Vium1310g00006 417 MobiDBLite consensus disorder prediction 98 119 - -
Vium1310g00006 417 SUPERFAMILY HSP40/DnaJ peptide-binding domain 119 262 IPR008971 GO:0006457|GO:0051082
Vium1310g00006 417 Gene3D - 261 343 - -
Vium1310g00006 417 CDD DnaJ_C 119 345 - -
Vium1310g00006 417 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 11 397 IPR044713 GO:0006457|GO:0030544
Vium1310g00006 417 Pfam DnaJ central domain 148 213 IPR001305 GO:0031072|GO:0051082
Vium1310g00006 417 FunFam DnaJ subfamily A member 2 148 213 - -
Vium1310g00006 417 PRINTS DnaJ domain signature 66 85 IPR001623 -
Vium1310g00006 417 PRINTS DnaJ domain signature 46 66 IPR001623 -
Vium1310g00006 417 PRINTS DnaJ domain signature 15 33 IPR001623 -
Vium1310g00006 417 FunFam DnaJ subfamily A member 2 261 343 - -
Vium1310g00006 417 MobiDBLite consensus disorder prediction 375 417 - -
Vium1310g00006 417 ProSiteProfiles Zinc finger CR-type profile. 135 218 IPR001305 GO:0031072|GO:0051082
Vium1310g00006 417 MobiDBLite consensus disorder prediction 375 397 - -
Vium1310g00006 417 SMART dnaj_3 12 66 IPR001623 -
Vium1310g00006 417 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 145 216 IPR036410 -
Vium1310g00006 417 CDD DnaJ_zf 148 213 IPR001305 GO:0031072|GO:0051082
Vium1310g00006 417 Gene3D DnaJ domain 10 108 IPR036869 -
Vium1310g00006 417 FunFam dnaJ protein homolog 10 109 - -
Vium1310g00006 417 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Vium1310g00006 417 Hamap Chaperone protein DnaJ [dnaJ]. 10 368 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vium1310g00006 417 Gene3D - 148 213 - -
Vium1310g00006 417 Pfam DnaJ domain 14 71 IPR001623 -
Vium1310g00006 417 Pfam DnaJ C terminal domain 122 342 IPR002939 -
Vium1310g00006 417 FunFam Chaperone protein dnaJ 3 214 254 - -
Vium1310g00006 417 SUPERFAMILY Chaperone J-domain 8 109 IPR036869 -
Vium1310g00006 417 Coils Coil 412 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1310g00006 Vium-Chr1310 16931 19640 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1310g00006 14 73 C2H2 Transcription Factor Family AT1G74250 43.478 1.20e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1310g00006 K09503 - gmx:547558 698.353