Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13102g00001 CGTGAAGGTTGGTGGTACAGACCAGAGTACATAATCAACGAGTTGAATATAAACTCAGTGATAACGACTCCGTGTCACGACGAGATTTTGCCCATCAACTCATGGACAACGCAGAGGCCTTACGTAGTCAGAGGCTACGCTTATTCTGGTGGTGGGAGGAAAGTGACACGTGTGGAGGTAACACTGGATGGTGGAGAAACGTGGCACGTGTGCACACTGGACCATCCTGAGAAACCTAACAAATATGGGAAGTATTGGTGCTGGTGCTTCTGGTCTTTGGAGGTGGAGGTGTTGGACCTGCTGGGGACCAAAGAGATTGCAGTTCGAGCTTGGGATGAAGGTCTCAACACGCAGCCAGAAAACCTAATTTGGAATCTTATGGGAATGATGAACAACTGTTGGTTCAGAGTGAAGACAAATGTGTGCAAGCCCCACAAGGGTGAGATTGGAATGGTGTTCGAACACCCAACCCAACCAGGGAACCAACCTGGTGGATGGATGGCCAAGGAAAAGCACTTGGAGACATCACAAGACACCAAACCAAGCCTCAAAAAGAGTGTGTCTTCGCCATTCATGAACACCAATTCAAAAATGTTCTCCATCTCCGAAGTTAAAAAACATAGCATCCCTGACTCCGCTTGGATAATCGTCCACGGTCACGTCTACGACTGCACTCGCTTCCTCAAAGATCACCCTGGTGGCACCGACAGCATCCTCATCAATGCCGGCACTGACTGCACCGAAGAGTTTGACGCCATCCACTCTGACAAAGCAAAGAAGATGCTCGAAGATTATCGAATTGGCGAGCTCATCACTACAGGTTACACTTCAGACTCATCGCCGAACAACTCCGTGCATGGCAATTCAGAATTCACCCATTTGGCTCCCATCAAGGAAATCACCACAAAACCACCACTACCACCACGTAGTGTGGCTCTCAACCCACGTGAGAAAATCCCATGCAAACTCGTGTCAAAGACCTCCATTTCCCACGACGTGAGGCTTTTCCGTTTCGCACTGCCCTAAGAGAACCAACTCGTGGGTTTACCAGTGGGTAAGCATATTTTCTTGTGCGCCACCATAGATGGAAAGCTATGCATGCGAGCCTACACTCCGACAAGTGGCGTGGATGAAGTGGGGTTCTTCGATTTGCTCGTCAAGGTTTACTTCAAAGGAGTGCACCCCAAGTTCCCGAACGGAGGACTTATGTCACAGCATTTGGAGTCTCTCTCCATTGGGTCCATGTTGGACGTGAAGGGTCCAGTGGGTCACATAGAGTACACCGGCAGAGGCAACTTCACGGTTCATGGGAAACCTAGATCCGCAAAGAGGTTAGCCATGCTGGCTGGTGGAACCGGGATCACACCAATCTACCAAGTGGCGCAAGCGATTCTGAAAGACCCAGAGGACCTCACCGAAATGCATGTGGTGTATGCAAACCGCACAGAGGATGACATTCTTCTGAGGGAGGAGTTGGATGCATGGGCGAAGGAACACAGTGAGCGGTTCAGGGTGTGGTACGTTGTGGAAACCGCGAAGGAAGGGTGGGAATACAGTGTGGGATTCATCACAGAAACTATCATGAGGGAGCATCTTCCAGAAGCTTCAAGGGATTCCTTGGCTTTGACTTGTGGACCACCACCCATGATTCAGTTCGCGGTGCAGCCCAACTTGGAGAAGATGGGGTACGATATCAAGAATGATTTGCTCGTGTTTTAG 1719 0.4997 REGWWYRPEYIINELNINSVITTPCHDEILPINSWTTQRPYVVRGYAYSGGGRKVTRVEVTLDGGETWHVCTLDHPEKPNKYGKYWCWCFWSLEVEVLDLLGTKEIAVRAWDEGLNTQPENLIWNLMGMMNNCWFRVKTNVCKPHKGEIGMVFEHPTQPGNQPGGWMAKEKHLETSQDTKPSLKKSVSSPFMNTNSKMFSISEVKKHSIPDSAWIIVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFDAIHSDKAKKMLEDYRIGELITTGYTSDSSPNNSVHGNSEFTHLAPIKEITTKPPLPPRSVALNPREKIPCKLVSKTSISHDVRLFRFALPXENQLVGLPVGKHIFLCATIDGKLCMRAYTPTSGVDEVGFFDLLVKVYFKGVHPKFPNGGLMSQHLESLSIGSMLDVKGPVGHIEYTGRGNFTVHGKPRSAKRLAMLAGGTGITPIYQVAQAILKDPEDLTEMHVVYANRTEDDILLREELDAWAKEHSERFRVWYVVETAKEGWEYSVGFITETIMREHLPEASRDSLALTCGPPPMIQFAVQPNLEKMGYDIKNDLLVF 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13102g00001 572 Gene3D - 192 273 IPR036400 -
Vium13102g00001 572 Pfam Oxidoreductase FAD-binding domain 321 427 IPR008333 -
Vium13102g00001 572 SUPERFAMILY E set domains 14 141 IPR014756 -
Vium13102g00001 572 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 316 428 IPR017927 GO:0016491
Vium13102g00001 572 PRINTS Eukaryotic molybdopterin domain signature 43 57 IPR008335 GO:0016491
Vium13102g00001 572 PRINTS Eukaryotic molybdopterin domain signature 122 135 IPR008335 GO:0016491
Vium13102g00001 572 PRINTS Eukaryotic molybdopterin domain signature 84 94 IPR008335 GO:0016491
Vium13102g00001 572 PRINTS Eukaryotic molybdopterin domain signature 57 69 IPR008335 GO:0016491
Vium13102g00001 572 PRINTS Eukaryotic molybdopterin domain signature 12 24 IPR008335 GO:0016491
Vium13102g00001 572 PRINTS Eukaryotic molybdopterin domain signature 109 121 IPR008335 GO:0016491
Vium13102g00001 572 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 227 234 IPR018506 GO:0020037
Vium13102g00001 572 FunFam NADH-cytochrome b5 reductase 307 422 - -
Vium13102g00001 572 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 196 271 IPR001199 -
Vium13102g00001 572 Gene3D - 14 189 - -
Vium13102g00001 572 Gene3D - 423 567 IPR039261 -
Vium13102g00001 572 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 416 566 IPR039261 -
Vium13102g00001 572 PANTHER NADH-CYTOCHROME B5 REDUCTASE 181 568 IPR001834 GO:0016491
Vium13102g00001 572 Pfam Cytochrome b5-like Heme/Steroid binding domain 202 270 IPR001199 -
Vium13102g00001 572 SMART Cyt_b5_2 199 271 IPR001199 -
Vium13102g00001 572 Pfam Mo-co oxidoreductase dimerisation domain 10 141 IPR005066 GO:0016491|GO:0030151
Vium13102g00001 572 Pfam Oxidoreductase NAD-binding domain 447 554 IPR001433 GO:0016491
Vium13102g00001 572 FunFam Nitrate reductase 14 190 - -
Vium13102g00001 572 CDD cyt_b5_reduct_like 321 567 - -
Vium13102g00001 572 PRINTS Cytochrome B5 reductase signature 446 465 - -
Vium13102g00001 572 PRINTS Cytochrome B5 reductase signature 540 548 - -
Vium13102g00001 572 PRINTS Cytochrome B5 reductase signature 347 358 - -
Vium13102g00001 572 PRINTS Cytochrome B5 reductase signature 368 375 - -
Vium13102g00001 572 PRINTS Cytochrome B5 reductase signature 413 427 - -
Vium13102g00001 572 PRINTS Cytochrome B5 reductase signature 484 495 - -
Vium13102g00001 572 PRINTS Cytochrome B5 signature 246 253 IPR001199 -
Vium13102g00001 572 PRINTS Cytochrome B5 signature 221 231 IPR001199 -
Vium13102g00001 572 PRINTS Cytochrome B5 signature 258 270 IPR001199 -
Vium13102g00001 572 PRINTS Cytochrome B5 signature 231 245 IPR001199 -
Vium13102g00001 572 SUPERFAMILY Riboflavin synthase domain-like 309 428 IPR017938 -
Vium13102g00001 572 FunFam Nitrate reductase [NADH] 423 572 - -
Vium13102g00001 572 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 484 495 IPR001709 GO:0016491
Vium13102g00001 572 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 472 481 IPR001709 GO:0016491
Vium13102g00001 572 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 368 375 IPR001709 GO:0016491
Vium13102g00001 572 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 446 465 IPR001709 GO:0016491
Vium13102g00001 572 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 230 240 IPR001709 GO:0016491
Vium13102g00001 572 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 516 532 IPR001709 GO:0016491
Vium13102g00001 572 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 540 548 IPR001709 GO:0016491
Vium13102g00001 572 Gene3D Translation factors 309 422 - -
Vium13102g00001 572 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 195 275 IPR036400 -
Vium13102g00001 572 FunFam Nitrate reductase 192 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13102g00001 Vium-Chr13102 5 3071 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13102g00001 309 563 NADPH P450 reductases AT5G17770 40.078 1.69e-56 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13102g00001 K10534 - gmx:100813471 1110.52