Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13101g00001 ATGGTCTTGGCTGGCATCTTAGGAAGATATTATTGCCACATGAAGAATCCTACTTACATAATGATTGAGAACTTTTTGAAGCAACATGGACACCTTTCATCCAAAAGGTACAATTACTTGGAGGTAAAGAAAATGACCAACTCCTTCAAAAAAAAATTAGGCCAAGGAGGGTTTGGTAGTGTATACAAAGGGAGGTTACAAAATGGAAGTCTTGTGGCAGTGAAGGTTTTAAGTAAGTCAAAAGGTGATGGAGAAGAATTCATCAATGAAGTTGCTAGTATTAGCATGACTTCTCATGTTAACATTGTCAGTTTACTGGGGTTTTGCTTGGAAGGCTCCAAAAGATTTCTCATATACGAGTACTTGCCCAATGGATCCCTTGAAAAGTTCATATATGAAGAGAAAGATCCTTTAAGGTTTAAACTCACAATGAATTGCACTACAATGTACAATATTGCCATTGGTGTTGCTCGAGGACTGGAGTATTTGCACAAGGGTTGTAACACCAAAATCTTGCATTTTGACATAAAACCTCACAATATACTACTAGATGAGTTATTTTGCCCCAAAATATCAGATTTTGGACTTGCAAAACTATGTCCAAGAAAAGAAAGTGCTGTGTCAATATTTGGTGCAAGAGGAACTGCAGGGTATATTGCTCCAGAAGTATTTTCCAGAAACTTTGGTGCAGTGTCGCATAAATCAGACGTCTACAGTTATGGAATGATGGTTTTGGAAATGCTTGGTGCTAGGGAGAATAATAATCGCAGAGTTGATTTTTCAAGTGAAAATTACTTTCCACATTGGATTTACAACCATCTTGAATCACAACAAGATCTACAATTTCGATGCGCCAAAAATCGAAATGATGAAGAAATGGTGAGGAAAATGACTATTGTAAGTTTGTGGTGCATACAGACCGACCCTTCAAATCGACCTGCAATGACTAAAGTGGTGGAAATGATGGAAGGCAGCATTAGCTCTGTGCAAATTCCTCCCAAATCTTTCCTTTATTCATCTTCGGTTCCACAATCCCAATCAAGTGATTCTTCATAG 1056 0.3778 MVLAGILGRYYCHMKNPTYIMIENFLKQHGHLSSKRYNYLEVKKMTNSFKKKLGQGGFGSVYKGRLQNGSLVAVKVLSKSKGDGEEFINEVASISMTSHVNIVSLLGFCLEGSKRFLIYEYLPNGSLEKFIYEEKDPLRFKLTMNCTTMYNIAIGVARGLEYLHKGCNTKILHFDIKPHNILLDELFCPKISDFGLAKLCPRKESAVSIFGARGTAGYIAPEVFSRNFGAVSHKSDVYSYGMMVLEMLGARENNNRRVDFSSENYFPHWIYNHLESQQDLQFRCAKNRNDEEMVRKMTIVSLWCIQTDPSNRPAMTKVVEMMEGSISSVQIPPKSFLYSSSVPQSQSSDSS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13101g00001 351 ProSiteProfiles Protein kinase domain profile. 47 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13101g00001 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Vium13101g00001 351 FunFam PR5-like receptor kinase 122 334 - -
Vium13101g00001 351 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Vium13101g00001 351 FunFam serine/threonine-protein kinase PBS1-like 21 121 - -
Vium13101g00001 351 SUPERFAMILY Protein kinase-like (PK-like) 30 322 IPR011009 -
Vium13101g00001 351 SMART serkin_6 47 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13101g00001 351 Pfam Protein kinase domain 50 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13101g00001 351 Gene3D Transferase(Phosphotransferase) domain 1 122 332 - -
Vium13101g00001 351 Gene3D Phosphorylase Kinase; domain 1 23 121 - -
Vium13101g00001 351 PANTHER RUST RESISTANCE KINASE LR10-RELATED 21 342 IPR045874 GO:0004672
Vium13101g00001 351 PIRSF ILK 26 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13101g00001 Vium-Chr13101 7 1110 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13101g00001 30 351 Receptor kinase-like Gene Family AT5G38260 57.231 2.03e-127 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium13101g00001 Pkinase 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13101g00001 - - gmx:100807312 599.742