Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13100g00007 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGAATTTCCTGGGACACTGATGAGGAACGTCTCAGAGAGTATTTTGGGAAATATGGAGAGGTAATAGAGGCTGTGATCATGAGAGATCGCACAACAGGTCGTGCTCGTGGTTTCGGATTTGTTGTCTTTTCTGATCCTGTTGTTGCTGAAAGAGTCATCATGGATAAGCACATAATTGATGGCCGCACAGTTGAAGCTAAGAAAGCTGTTCCTAGGGACGATCAGATCACTGTAAACAGACAGTCTGGTACCATCCAAGGATCTCCAGGTCCTGGTCGCACCAAAAAGATTTTTGTTGGAGGTTTACCATCAACAATCACAGAGAGTGATTTTAAAAAGTACTTTGATCAGTTTGGTACAATTACTGATGTTGTTGTAATGTATGATCACAATACCCAGAGGCCGAGAGGTTTTGGCTTCATCACATATGATTCAGAAGAAGCCGTGGACAGAGTTCTCTATAAAACCTTTCATGAACTCAATGGAAAGATGGTTGAGGTCAAGAGGGCAGTTCCCAAAGAGCTTTCGCCTGGACCTAGCCGGAGCCCATTGGTAGGATATAACTATAGCCTGAATAGGACCGGTAGCTTACTAAATAGTTATGCTCAGGGTTTCAATATGAGTCCAATTGGAAATTATGGTGTCAAAATGGAAGGAAGGTTCAGTCCACTTACTAGTGCTAGAAGTGGGTTTACCCCATTTGGCTCCAATGGTTATGGAATGGGAGTGAATTTGGATTCAGGATTGAACCCAAGCTATGGAGGGACTTCTGGTTATGGTGGCAGTCTTGGATATGGTCGGATAAATCCCTTATACAATGGCAACCCAAACAGATATACCACTCCTATTGGCAATAGTGGGGGAAGTGGGAGAAGTGATGCTCTAATGAACTCGGCTTCTCGGAGTGTTTGGGGAAATGGGGGCCTGAACAGTGCTGCTGCCAATAATCCATCCAGCCCTGGCAATTACTTGGGATCCGGAAGTGGGGCTTTTGGTGTTTCAATTGGAAATAGTGGCCCAAATTGGGGTTCATCAGTTCCAACCCAGGGAGGAGGGGCTGCTTCTGGGTATAGTACTTGGGGTAACACTTATGAAGGTGGGGATAACAGCATTGGTTTAGGAGGGGGAGGGTATGGAAGGAACAGCAGTCCAAGTGTGCCTCAATCCTCAACATTTACTGCACCAACTGGTGGTTATGAAGGATCTTATGGGGACTTGTACCGCAGTGGTTCAGTTTACAGTGATTCAACTTGGCAGTCTGCTGCTTCTGAAATAGATGCTTCTGGTTCGTTTGGTTATGGTGGGCTTGGTGGTATAGCTTCAGATGATCCAGTAAAGAGTTCTGAAGGTTTCATTGGAAACTACAATGTAATAAGTAGACAAACTAATAGAGGAATTGCTGCGTAG 1440 0.45 MESDLGKLFIGGISWDTDEERLREYFGKYGEVIEAVIMRDRTTGRARGFGFVVFSDPVVAERVIMDKHIIDGRTVEAKKAVPRDDQITVNRQSGTIQGSPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRSPLVGYNYSLNRTGSLLNSYAQGFNMSPIGNYGVKMEGRFSPLTSARSGFTPFGSNGYGMGVNLDSGLNPSYGGTSGYGGSLGYGRINPLYNGNPNRYTTPIGNSGGSGRSDALMNSASRSVWGNGGLNSAAANNPSSPGNYLGSGSGAFGVSIGNSGPNWGSSVPTQGGGAASGYSTWGNTYEGGDNSIGLGGGGYGRNSSPSVPQSSTFTAPTGGYEGSYGDLYRSGSVYSDSTWQSAASEIDASGSFGYGGLGGIASDDPVKSSEGFIGNYNVISRQTNRGIAA 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13100g00007 479 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Vium13100g00007 479 Gene3D - 105 185 IPR012677 -
Vium13100g00007 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Vium13100g00007 479 Gene3D - 6 87 IPR012677 -
Vium13100g00007 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Vium13100g00007 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Vium13100g00007 479 MobiDBLite consensus disorder prediction 392 408 - -
Vium13100g00007 479 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Vium13100g00007 479 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Vium13100g00007 479 CDD RRM2_Hrp1p 107 184 - -
Vium13100g00007 479 MobiDBLite consensus disorder prediction 386 408 - -
Vium13100g00007 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Vium13100g00007 479 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 474 - -
Vium13100g00007 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Vium13100g00007 479 SMART rrm1_1 107 179 IPR000504 GO:0003723
Vium13100g00007 479 SMART rrm1_1 7 78 IPR000504 GO:0003723
Vium13100g00007 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13100g00007 Vium-Chr13100 37009 41317 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13100g00007 2 185 Eukaryotic Initiation Factors Gene Family AT2G36660 29.744 7.26e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13100g00007 K14411 - gmx:100788515 834.713