Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13080g00004 ATGGAAATGAACACAGTGAAGATTTTGTTAGGAGCAGTTTTGGCGTTGTTGATTCATGTCTTCAATGTGTTTGTGTTTAGGCCAAGATCAATGAGAGCAAAGCTTCAGAAGCAGGGGATTAAAGGGCCTTCTCCTCACTTCTACTTTGGCAACATCCCAGAAATGAAGAAGATTTTGCTGCAAATTCAGTCAGCAGCACCAGCCACTGAAGTCAAAGAGAAAGATGAAGGATTTTCTCTTTCTCACAACTGGCCTTTCACTCTCTTCCCTCATGTTTATAAGTGGATCAACCAATATGGTCCCATGTACTTGTTTTCTTCTGGGTCTATACATTGGCTAGTGGTGTCAGATATAGAGATGGTGAAGGAAGTGGTCATGCACACCTCTTTGAATCTAGGGAAGCCTACATATCTGTCCAAAGATATGTTGCCACTCTTGGGCAAAGGCATAATGACATCAAATGGGTCAATTTGGGTTCACCAGAGGAAGATAATTGCCCCAGAACTGTTCCTTGTTAAGGTGAAGGCAATGGTTAATCTGATGGTGGACTCAACAAATACAACACTAAGGTCTTGGGAGGGTAGACTTGAAGGTGAGGGAGCAGTATCAGAGATTCAAATCGATGAAGATCTTCGAAGTTTGTCAGCTGACATAATTGCCAGAGCTTGTTTTGGGAGCAATTACATTGAAGGAAAAGAAATATTCTCAAAGTTAAGAGATCTTCAAACTCTCTTGTCCAAGCGTCATGCTGGAATTCCAGGCTTTCGATACTTGCCAAACAAAAGCAACAGACAAATCTGGAGATTGGGGAAAGAGATTGACTCAAAGATAGCAAAGCTCATAAAACAACGTCTGGAGGAAAGTCATGAGCAGGATCTCTTACAAATGATTCTTGAGGGTGCAAAGAACTGCGAGGGTGGTGATGGCCTCATATCAGATTCCATCTCATGTGACAGGTTTATGATAGATAACTGCAAAAATATATTCTTTGCTGGACATGAGACTACTGCCATCACAGCATCATGGTGCTTAATGCTGTTAGCTGAGCATCAAGATTGGCAAGACCGTGTCCGAGCTGAGGTGCTTGAAGTTTGTGGAAAAAATGCTCCTGATGCAAACATGCTTAGAAGCTTGAAAACGTTAAACATGGTGATTCAAGAGACTTTGAGGCTGTATCCACCAGCAGTATTTGTTGTTAGAACAGCTCTTCAAGATGTAAATCTAAAAGGGTTACAAATTCCAAAAGGAATGAACATTCAGATTCCACTCTCAGTGCTGCAGCATGACCCTCTTCTCTGGGGTCCTGATGCTCACAAGTTCAACCCTGAAAGATTTGCAAATGGGGTGCTTGGAGCATGCAAGGTTCCACAAGCTTATATGCCATTTGGAATAGGGGCACGTGTGTGTGTTGGACAGCACTTAGCCATGATAGAACTGAAGGTGATTTTGTCTCAGATTCTGATGAAGTTTCACTTCTCTCTCTCACCAAGTTACTGCCATTCACCAGCCTTTCGTTTGGTCATAGTACCTGGTGGCCAGGGAGTTGTTCTTCGGATGACAAGAATTTGA 1569 0.4257 MEMNTVKILLGAVLALLIHVFNVFVFRPRSMRAKLQKQGIKGPSPHFYFGNIPEMKKILLQIQSAAPATEVKEKDEGFSLSHNWPFTLFPHVYKWINQYGPMYLFSSGSIHWLVVSDIEMVKEVVMHTSLNLGKPTYLSKDMLPLLGKGIMTSNGSIWVHQRKIIAPELFLVKVKAMVNLMVDSTNTTLRSWEGRLEGEGAVSEIQIDEDLRSLSADIIARACFGSNYIEGKEIFSKLRDLQTLLSKRHAGIPGFRYLPNKSNRQIWRLGKEIDSKIAKLIKQRLEESHEQDLLQMILEGAKNCEGGDGLISDSISCDRFMIDNCKNIFFAGHETTAITASWCLMLLAEHQDWQDRVRAEVLEVCGKNAPDANMLRSLKTLNMVIQETLRLYPPAVFVVRTALQDVNLKGLQIPKGMNIQIPLSVLQHDPLLWGPDAHKFNPERFANGVLGACKVPQAYMPFGIGARVCVGQHLAMIELKVILSQILMKFHFSLSPSYCHSPAFRLVIVPGGQGVVLRMTRI 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13080g00004 522 Gene3D Cytochrome P450 24 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13080g00004 522 PANTHER CYTOCHROME P450 FAMILY MEMBER 20 503 - -
Vium13080g00004 522 PRINTS E-class P450 group I signature 469 492 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13080g00004 522 PRINTS E-class P450 group I signature 382 400 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13080g00004 522 PRINTS E-class P450 group I signature 340 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13080g00004 522 PRINTS E-class P450 group I signature 459 469 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13080g00004 522 PRINTS E-class P450 group I signature 214 232 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13080g00004 522 PRINTS E-class P450 group I signature 96 115 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13080g00004 522 PRINTS E-class P450 group I signature 320 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13080g00004 522 PRINTS P450 superfamily signature 460 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13080g00004 522 PRINTS P450 superfamily signature 469 480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13080g00004 522 PRINTS P450 superfamily signature 383 394 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13080g00004 522 PRINTS P450 superfamily signature 331 348 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13080g00004 522 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 462 471 IPR017972 GO:0005506|GO:0016705
Vium13080g00004 522 Pfam Cytochrome P450 97 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13080g00004 522 SUPERFAMILY Cytochrome P450 85 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13080g00004 Vium-Chr13080 21576 25651 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13080g00004 120 519 Cytochrome P450 AT5G24900 46.959 3.38e-128 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13080g00004 K24544 - gmx:100780335 880.552