Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13072g00001 ATGGAACACTCCCCTTCCCTTTCGTTGTCAAATCTTCAAAGCCTTTGGTTTTTTGTATGCTTTATCATTGTGCTAAAAGCCCTAATACCTAGCTGGATTCAGAAATGGTCCAAGAAACAAAAACCAAAACTTCCCCCAGGTCCCAAACCATGGCCTGTGGTGGGCAACCTTCCTGCCATGCTAGCAAACAAACCTGTTCATCAATGGATACACAATCTCATGAAAGAAATGAACACTGAGATTGCATGTATCCGCCTAGGAAATACCTATGTTATCCCAGTTACTTGTCCCACCATTGCCAGACAGTTTTTGAGTGAACAGGATGCAACGTTTGCATCAAGATCACTCACCACTTGCACTGATCTCATTACTGGCGGATATTTAACCACAATTTTAGTGCCATTTGGGGACCAATGGAAGAAAATGAAAAAAATCCTTACCACTGCTTTGCTTTCCCCACACAAGCACCTATTGCTCCAGGACAGAAGGACTGAAGAAGCTGACAATCTTATGTTTTACATCTACAACAAAAGCAAAAGTGTGAACAACGGTGTTGCTGGCCTTGTGAACATTAGAAGTGTTGCAAGGCATTATTGTGGCAACGTTATGAGGAAAATTCTTTTCAGTACAAGGTATTTTGGGAAGGGTACGATGGATGGAGGACCTGCTTTTGAGGAGGAAGAACAAGTTGAGTCCGTCTTCGTTTTACTTAGGTATCTTTATGCTTTTTCTATTTCTGATTTTATCCCATGCTTGAGGAGACTTGACTTGGATGGACACCAGAAGAAGGTCAAGGAAGCTTTGAAAGTCATGAAGAAATATCATGATCCCATCGTTCAAGAAAGAGTTAAACAATGGAATGATGCAAAAAAGATTGATGAACAGGACTGGCTTGACATTTTGATCTCCTTGAAAGATGCCGACAACAATCCATTATTGACAATTGAAGAAATTAGTGCACAAATTGTGGAAATATTGATTGCAACTGTGGACAATCCATCAAATGCTTTTGAATGGGCACTCGCTGAAATGATTAACCAACCAAACTTGCTCCAACGAGCCATTGAGGAATTGGACAGTGTGGTGGGAAAAGAGAGGTTGGTTCAAGAATCAGATATACCAAAGCTCAACTTTGTAAAGGCCTGTGCAAGAGAAGCTTTTCGCCTTCATCCATTGGCAGCTTTTAATGTTCCTCATGTCTCAATGAGTGATACAACTGTGGGAAATTACTTCATCCCGAAGGGTAGCCATGTAATACTAAGTAGAAGAGAACTTGGAAGAAACCCAAAAGTGTGGAATGAACCCCTCAAGTTTAAACCAGAACGTCACCTTAAGAGTGATAATGGGTCCAATGTAGTTTTGACAGAGCCAAATTTGAGGTTCATATCATTTAGCACAGGAAGGCGTGGTTGCCCTGGAGTTACGCTTGGGACCACAATGACCATGATGTTATTTGCAAGGTTGCTCCATGGCTTCACTTGGACTGCCCCATCCAATGTTTCAAAAATAAACCTAGCCGAGTCCAATGATGGTTTAAATCTTGCAGAGCCACTTATGGCAGTTGCTAAGCCCAGATTACCACCACAATTATATCACCTTTAA 1602 0.4145 MEHSPSLSLSNLQSLWFFVCFIIVLKALIPSWIQKWSKKQKPKLPPGPKPWPVVGNLPAMLANKPVHQWIHNLMKEMNTEIACIRLGNTYVIPVTCPTIARQFLSEQDATFASRSLTTCTDLITGGYLTTILVPFGDQWKKMKKILTTALLSPHKHLLLQDRRTEEADNLMFYIYNKSKSVNNGVAGLVNIRSVARHYCGNVMRKILFSTRYFGKGTMDGGPAFEEEEQVESVFVLLRYLYAFSISDFIPCLRRLDLDGHQKKVKEALKVMKKYHDPIVQERVKQWNDAKKIDEQDWLDILISLKDADNNPLLTIEEISAQIVEILIATVDNPSNAFEWALAEMINQPNLLQRAIEELDSVVGKERLVQESDIPKLNFVKACAREAFRLHPLAAFNVPHVSMSDTTVGNYFIPKGSHVILSRRELGRNPKVWNEPLKFKPERHLKSDNGSNVVLTEPNLRFISFSTGRRGCPGVTLGTTMTMMLFARLLHGFTWTAPSNVSKINLAESNDGLNLAEPLMAVAKPRLPPQLYHL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13072g00001 533 CDD CYP79 79 526 - -
Vium13072g00001 533 FunFam Cytochrome P450 9 37 529 - -
Vium13072g00001 533 PRINTS E-class P450 group I signature 317 334 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13072g00001 533 PRINTS E-class P450 group I signature 421 445 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13072g00001 533 PRINTS E-class P450 group I signature 461 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13072g00001 533 PRINTS E-class P450 group I signature 198 216 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13072g00001 533 PRINTS E-class P450 group I signature 99 120 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13072g00001 533 PRINTS E-class P450 group I signature 471 494 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13072g00001 533 PRINTS E-class P450 group I signature 337 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13072g00001 533 PRINTS E-class P450 group I signature 380 398 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13072g00001 533 Pfam Cytochrome P450 45 511 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13072g00001 533 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 464 473 IPR017972 GO:0005506|GO:0016705
Vium13072g00001 533 PANTHER CYTOCHROME P450 703A2-RELATED-RELATED 16 532 - -
Vium13072g00001 533 SUPERFAMILY Cytochrome P450 45 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium13072g00001 533 Gene3D Cytochrome P450 36 527 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13072g00001 Vium-Chr13072 22120 23867 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13072g00001 9 531 Cytochrome P450 AT4G39950 53.626 0.0 593