Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13066g00002 ATGGAGCAAAAAGGAGGTGTGCTTATGCAACGATATGAACTAGGGAGATTACTAGGCCAAGGAACTTTTGCAAAGGTTTACCATGCTAGGAACCTCATAACTGGCATGAGCGTGGCCATAAAAATTATCGATAAAGAGAAGATTCTGAAAGTTGGGATGATTGAACAGATTAAGCGTGAAATTTCAGTGATGAGACTAATCAGGCATCCACATGTGGTTGAGCTTTATGAGGTGATGGCCAGCAAAACCAAAATTTACTTTGTCATGGAGTTTGTAAAAGGCGGTGAGCTATTTGACAAGGTATCAAAAGGAAAGCTCAACCAGGATGATGCTAGGAGATATTTTCAGCAGTTGATCAGTGCTGTAGACTACTGCCATAGCAGAGGTGTGTGTCATCGTGATCTGAAACCAGAAAATCTTCTACTGGATGAAGATGGGAATTTGAAGGTCTCAGATTTTGGGTTAAGTGCCCTGGCCGAAACTAAGCACCAAGATGGGTTACTCCATACCACATGTGGTACCCCTGCCTATGTCGCTCCAGAAGTGATAAACAGAAGGGGTTATGATGGAGCCAAAGCTGACATATGGTCATGTGGGGTGATCTTGTATGTTCTATTAGCTGGTTTTCTTCCATTTAGAGATCCAAATCTGATGGAGATGTACAGGAAGATTGGCAAGGGAGAATTCAAATTTCCTAACTGGTTTGCACCAGATGTGCGCAGACTGCTGTCAAAAATCTTGGATCCAAACCCGAAGACTAGGATATCAATGGCAAAAATTATGGAAAGTTCTTGGTTCAGAAAGGGGTTACAGAAGCCCACCATTACTCAGAACAAAGACGAAGAACTATCCCCTCTGGATACTGATGGACTATTTGGTTTTTGTGAGAATGGAGATCCTATTGAACCAGCAAAAGACTCAAAACCCTGTAATCTAAATGCCTTTGACATCATCTCCTATTCCTCAGGTTTTGACTTGTCTGGTTTGTTTGAGGAGACTGATCGAAAGAAAGAAGCACGATTTACATCTGACAAGCCAGCCCCCATTATCATCTCCAAGTTGGAAGAAATCTGCAAGCGCCTGCGGTTGAAGCTCAAGAAGAAAGATGGAGGTTTGTTCAAGTTGGAAGGTTCCAAGGTAGGCAGAAAAGGGCCTTTGGGTATTGATGCTGAGATTTTTGAGATCACCCCAGTTTTCCATCTTGTGGAGTTAAAAAAGTCTAGTGGAGACACATTGGAGTACCAGAAACTTTTGAATCAGGAAGTGAGGCCTGCACTTAAGGACATTGTTTGGAACTGGCAAGGAGAACAGCCACATCAACTGCAACATGGTGTATTGCAGAAAGAAGAACAAGAACCTTCTTATCCTGCCATATCAGAGCTTGTGCCACAACCAACTGCGTAG 1404 0.4288 MEQKGGVLMQRYELGRLLGQGTFAKVYHARNLITGMSVAIKIIDKEKILKVGMIEQIKREISVMRLIRHPHVVELYEVMASKTKIYFVMEFVKGGELFDKVSKGKLNQDDARRYFQQLISAVDYCHSRGVCHRDLKPENLLLDEDGNLKVSDFGLSALAETKHQDGLLHTTCGTPAYVAPEVINRRGYDGAKADIWSCGVILYVLLAGFLPFRDPNLMEMYRKIGKGEFKFPNWFAPDVRRLLSKILDPNPKTRISMAKIMESSWFRKGLQKPTITQNKDEELSPLDTDGLFGFCENGDPIEPAKDSKPCNLNAFDIISYSSGFDLSGLFEETDRKKEARFTSDKPAPIIISKLEEICKRLRLKLKKKDGGLFKLEGSKVGRKGPLGIDAEIFEITPVFHLVELKKSSGDTLEYQKLLNQEVRPALKDIVWNWQGEQPHQLQHGVLQKEEQEPSYPAISELVPQPTA 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13066g00002 467 CDD STKc_SnRK3 11 265 - -
Vium13066g00002 467 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 5 428 - -
Vium13066g00002 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Vium13066g00002 467 FunFam Non-specific serine/threonine protein kinase 2 287 - -
Vium13066g00002 467 Pfam NAF domain 309 367 IPR004041 GO:0007165
Vium13066g00002 467 FunFam Non-specific serine/threonine protein kinase 307 431 - -
Vium13066g00002 467 Gene3D Kinase associated domain 1, KA1 306 432 - -
Vium13066g00002 467 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Vium13066g00002 467 Gene3D Transferase(Phosphotransferase) domain 1 3 296 - -
Vium13066g00002 467 CDD CIPK_C 313 427 - -
Vium13066g00002 467 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13066g00002 467 MobiDBLite consensus disorder prediction 448 467 - -
Vium13066g00002 467 SUPERFAMILY Protein kinase-like (PK-like) 8 277 IPR011009 -
Vium13066g00002 467 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Vium13066g00002 467 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13066g00002 467 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13066g00002 467 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13066g00002 Vium-Chr13066 27237 30760 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13066g00002 1 437 CBL-interacting serine-threonine protein kinases AT5G58380 66.150 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium13066g00002 Pkinase 2.3e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13066g00002 K07198 - gmx:100815651 866.685