Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13056g00001 ATGTCGTACCAGGCTACGACAACAGATAACACTGTTGTTGAACCAGAAGAACACAATATTCCAACAAAACAACTGAGAACTAGTGTTGCAAAAGATACCTTAAATCCTGAGTGGAATGAAGAACTGACCCTTTATGTAAAAGATGTTAACATTCCAATACTTGTGACAGTTACAGACAAAGACACTTTCACACCAGATGACAACATGGGTGATGCAGAAATAGATTTAAAGCCATATCTTCAGTGTGTGAAGCTGGAGTTAAGAGATCTGGCAGAGGGTCACATAGTGAAGCAGATTCAACCAGATAGGACTAACTGCCTTGCTGAAGAAAGCAACTGCATATGGAAAAATGATAAACTCATCCAAGAGATGACTTTAAGATTGAGAAATGTCAAGCATGGGGAAATAACTGTAGAAATTGGGTGGGTTACTCTTCCAGATTCAAAAGGCTTATCACAAGTTCAGTTTTAG 471 0.3864 MSYQATTTDNTVVEPEEHNIPTKQLRTSVAKDTLNPEWNEELTLYVKDVNIPILVTVTDKDTFTPDDNMGDAEIDLKPYLQCVKLELRDLAEGHIVKQIQPDRTNCLAEESNCIWKNDKLIQEMTLRLRNVKHGEITVEIGWVTLPDSKGLSQVQF 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13056g00001 156 Pfam C2 domain 22 78 IPR000008 -
Vium13056g00001 156 ProSiteProfiles C2 domain profile. 1 89 IPR000008 -
Vium13056g00001 156 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 23 149 IPR044562 -
Vium13056g00001 156 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 23 77 IPR035892 -
Vium13056g00001 156 Gene3D C2 domain 11 154 IPR035892 -
Vium13056g00001 156 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13056g00001 Vium-Chr13056 2223 3172 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13056g00001 24 153 C2H2 Transcription Factor Family AT1G70790 51.515 5.61e-44 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13056g00001 - - vum:124821800 321.242