Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1304g00001 ATGGGCGCACAGAAGAAAAGCGGCGCTAGGGTTTCCGAGGACCCCGACGAACTGGTGCGGATTCCGTTGCAGGCCATTCTCTTGGCTGATAGTTTCACCACCAAGTTCAGACCTATAACGCTTGAACGCCCCAAAGTGCTGCTTCCGCTCGTGAATGTTCCGATGATAAATTACACGCTGACTTGGCTCGAATCCGCCGGCGTCGAAGAGGTTTTCGTGTTCTGCTGTTCTCACTCCAAGCAGGTCATTAACTACCTCGAGAAATCCGAGTGGCTATCTCAACCGAGTTTCACGGTGACGACTATAGAATCGCAGAACTCTGTCAGCGCCGGAGATGCTCTCCGCGTAATCTACGAGCGCAATGTGATACAAGGAGACTTTGTCCTTATCAGTGGAGATACTGTGAGCAACATGTCGCTTACTCAGGCACTTCTGGAACATAAAGAAAGGAGGAAGAAAGATAATAATGCAGTAATGACTATGGTCATTAAACGGTCAAAGCCGAATCCAGCTATCCATCAATCTCGACTTGGTACTGATGAACTTTTTATGGCTATTGATCCTAATACCAAACAGCTTGTGTATTATGAGGATAGGGCAGACCAATCAAGAGGGACACTACAGCTTGACAAGTCATTGCTTGTTGATAATCCTTCGCTCTCTCTGCATCATGATAAGCAGGATTGTTACATTGACATTTGCTCGCAAGAAGTACTTAGTCTATTTACAGACAATTTTGACTACCAACATCTACGGCGTCATTTTGTCAAGGGATTGCTTCTTGATGATATAATGGGGTACAAAATTTTTGTTCATGAAATCCACTCAGACTATGCTGCAAGGATTGATAATTTCCGAAGTTATGATACTGTCAGCAAGGATATAATTCATCGATGGACTTATCCACTGGTGCCAGATGTAATGAATTTTGGCCATACTGCGACTAAACTTGAACGACAAGGAATGTACCGTGCTTTAGAAATATCACAATCGCAGTCTGCTGTTATTGGCCCTTTCACTGTCATTGGATCTGGCACCAAAATTGGGAATAACAGTAAAATTTTGAATTCCGTTATTGGCGAAGGATGTAAAATTGGGTCAAATGTTATCATAGAGGGATGCTATATATGGGATAACATCATCATAGAAGATGGCTGTAAACTCCAGCATGCAATTGTATGTGATGGAGTGATTATAAAGTCAGGGGCTGTTCTGGAACCTGGTGTTATTTTGTCTTTTAAGGTTGTAGTTGGGCCAGAGTTTGTTGTTCCTGCGTATTCACAAGTATCTCTTTTTCAGCAGCCAATTGAGGAGGACAGTGACGAGGAGCTTGAATATGCTGATAGTACTAGTGTCATAGGCAGCCAAGTGGATAAATCAGATGTAGAGATTGCTTCCAAAGTATTGGAGACAAATTTTAGTCCGGCTTCTCAGCTAGGTGTGGGTGGGGCAGGTCATGTTTGGTCAACATGTGAAGGTGGCCTCGAAGAAGAGTGGAGGCACTCGGTGGCGCCTATTCCTAAAGATAAAATTCAGGAGGCAATCAAAACTATGGAAGATGATATGGAGTTTGCTACGGATGACGTTTTTCTCCCACCTTCTGGAGAACTGAAACCTAATTCTAATGATTCAGATGATGATGATCATGAAGATTCTAGAGATGACTCTTATTACTTTGAGAAAGAGGTTGAAGCAACCTTTCTTAGAGCTGTGCATGAAAACATACAAGAAAGCCATTTGATCTTAGAAATCAATTCTTTGAAGTTGTCATACAATAAAGAAACTTCTGACTGTGCTGGAGCATTATTTTATGCCATGATGAAGTATGCTTTAGACATCCCCCATAGTTCATCTGGTGAGCTTTTCCCCTTTTCAACTGTTACATAA 1887 0.4245 MGAQKKSGARVSEDPDELVRIPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLTWLESAGVEEVFVFCCSHSKQVINYLEKSEWLSQPSFTVTTIESQNSVSAGDALRVIYERNVIQGDFVLISGDTVSNMSLTQALLEHKERRKKDNNAVMTMVIKRSKPNPAIHQSRLGTDELFMAIDPNTKQLVYYEDRADQSRGTLQLDKSLLVDNPSLSLHHDKQDCYIDICSQEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFVHEIHSDYAARIDNFRSYDTVSKDIIHRWTYPLVPDVMNFGHTATKLERQGMYRALEISQSQSAVIGPFTVIGSGTKIGNNSKILNSVIGEGCKIGSNVIIEGCYIWDNIIIEDGCKLQHAIVCDGVIIKSGAVLEPGVILSFKVVVGPEFVVPAYSQVSLFQQPIEEDSDEELEYADSTSVIGSQVDKSDVEIASKVLETNFSPASQLGVGGAGHVWSTCEGGLEEEWRHSVAPIPKDKIQEAIKTMEDDMEFATDDVFLPPSGELKPNSNDSDDDDHEDSRDDSYYFEKEVEATFLRAVHENIQESHLILEINSLKLSYNKETSDCAGALFYAMMKYALDIPHSSSGELFPFSTVT 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1304g00001 628 CDD eIF-2B_epsilon_N 23 239 IPR035543 -
Vium1304g00001 628 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 9 620 - -
Vium1304g00001 628 SUPERFAMILY Nucleotide-diphospho-sugar transferases 21 369 IPR029044 -
Vium1304g00001 628 MobiDBLite consensus disorder prediction 528 554 - -
Vium1304g00001 628 CDD W2_eIF2B_epsilon 559 622 IPR044123 GO:0005085|GO:0031369
Vium1304g00001 628 SUPERFAMILY ARM repeat 559 620 IPR016024 -
Vium1304g00001 628 Gene3D - 546 623 - -
Vium1304g00001 628 FunFam Translation initiation factor eIF-2B subunit epsilon 12 303 - -
Vium1304g00001 628 FunFam Trimeric LpxA-like enzyme 316 449 - -
Vium1304g00001 628 Gene3D Hexapeptide repeat proteins 312 440 - -
Vium1304g00001 628 SUPERFAMILY Trimeric LpxA-like enzymes 266 429 IPR011004 -
Vium1304g00001 628 Coils Coil 626 628 - -
Vium1304g00001 628 CDD LbH_eIF2B_epsilon 341 419 - -
Vium1304g00001 628 Coils Coil 508 528 - -
Vium1304g00001 628 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 16 303 IPR029044 -
Vium1304g00001 628 Pfam Nucleotidyl transferase 25 165 IPR005835 GO:0009058
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1304g00001 Vium-Chr1304 12452 20171 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1304g00001 1 622 Eukaryotic Initiation Factors Gene Family AT2G34970 63.911 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1304g00001 K03240 - gmx:100784894 1140.56