Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13040g00002 ATGAGTTCCCTCGAGTGTTATTCGTCGCGCGGGGACGATGTCGCCGTCGTGTCGCTGGATTCTCTACCGTTAGGGTTCCGATTCAGACCTACCGACGAGGAACTCATCGATTACTACCTGCGGCAGAAGATTAACGGCAATGGTGCCGAGGTTTGGGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCGTGGGACATGCCTGATTTGTCGGTGATACGGAACAAGGATCCGGAATGGTTCTTCTTCTGTCCACAGGACAGAAAGTACCCAAATGGGCATCGATTGAACAGAGCAACTAGTCATGGGTATTGGAAGGCGACCGGGAAGGATCGTAAAATAAAGTCTGGGATGATTTTGATTGGAATGAAGAAGACTTTGGTGTTCTACACTGGTCGTGCACCCAAAGGGAAGAGGACCAATTGGGTTATGCATGAGTATCGCCCCACCTTGAAGGAGCTTGATGGCACCAATCCTGGACAGAATGCATATGTCCTTTGTCGCTTGTTTAAAAAACATGATGAGAGCCTTGAAGTTTCGCACTGTGATGAGGCAGAACAGATTCCTTCAACTCCGATTGCTGCCAATTACTCTACGGAGGAAATACAGTCGGGTCTGGGTGTTGTTGCATTGTCCCCATCCATTGTTACAAAAGACGATAAGCACCAGACAATTGTCCCTACGCACTCTGAGGAAGCAATATCCAACGTTATAACTCCGGCTGATTGCCATAGTGATGGATATGATGCTTCTGATGCACAAGATAAATATTTGGCACCAGCTGCAGAGGAGTTTCAGCCATGGAACGTTGATATGTATTACGACCCGAAAAACGAGCTCTTGGATGACAAGTTATTCTCCCCTGAACTTGCACTTGTTCAACCAGAATTTCATTATCAACCAAACAGTGAATCAGATAGTCGGTATGGGCTTCAATATGGCACTAATGAGACAAACATTTCAGACTTTTTAAATTCTGTTGTTAACTGGGACGAACTACCCTACGAGGAGCCCAATGATCAACAGTGGCCCTACCCCTCGTTTAATGTTCAGAAAAGCGCATTAGGCAGCGATATAGATTCTGAACTTGCCAATATAATATATATGCAAGCTGGTTACGCCGAGGAGGCAAACGACAGAAAGATTCCTTTGGTGATAGCTCCAGAATTTTGCAGCACCACTGGCATCCCCATTGCCCGTGGTGGTGATGAGCAGAAGAGCAATGTTGAGTTATTTCAAAGCATTTCCCAGAGAGATTTTCCTGATATCAATATGGGCCAAGTATACAATGTAGTCCATGATTATCCGCCACCCAGAATCTATAATACCGTTCCTAGTGGGGATACCGGAATCATTAGAAGGACTAGAGTGGTTCAAACTGAAAAGCTAAGTGCAAACGTAACACAGGGTACAGCACAGAGGAGAATACGTTTGGCGCAGAAGGAGCAAAATAAGATGGTGAAAAAAGAGCTTGATTCAAAACCAATCATCGCTGTGGAGGAGAAAGCTTCAGAAAACCATGTTTCGGATGGAAGTGCTACGCTTACTAATGATGGGAATGAACTGCAGAAGACACCAGAGGCAAATGGCAATAGAAAGATTTCTCGTCAAGTTGCAAAAGCAAGTTCTACCTTTGGGTTGAAAGATTTTTTATTGCTCAGAAGAGTGCCATACATTTCAAAGGCTGCCTCCAATCGTAGCAAGTGCTCTTCTATTTTTGTAGTTTCTGCCTTTCTAATGGTCTCATTAGTGGTCTTTACTGACATCTGCGGATATCTTAAATTCTAA 1788 0.4457 MSSLECYSSRGDDVAVVSLDSLPLGFRFRPTDEELIDYYLRQKINGNGAEVWVIREIDVCKWEPWDMPDLSVIRNKDPEWFFFCPQDRKYPNGHRLNRATSHGYWKATGKDRKIKSGMILIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNAYVLCRLFKKHDESLEVSHCDEAEQIPSTPIAANYSTEEIQSGLGVVALSPSIVTKDDKHQTIVPTHSEEAISNVITPADCHSDGYDASDAQDKYLAPAAEEFQPWNVDMYYDPKNELLDDKLFSPELALVQPEFHYQPNSESDSRYGLQYGTNETNISDFLNSVVNWDELPYEEPNDQQWPYPSFNVQKSALGSDIDSELANIIYMQAGYAEEANDRKIPLVIAPEFCSTTGIPIARGGDEQKSNVELFQSISQRDFPDINMGQVYNVVHDYPPPRIYNTVPSGDTGIIRRTRVVQTEKLSANVTQGTAQRRIRLAQKEQNKMVKKELDSKPIIAVEEKASENHVSDGSATLTNDGNELQKTPEANGNRKISRQVAKASSTFGLKDFLLLRRVPYISKAASNRSKCSSIFVVSAFLMVSLVVFTDICGYLKF 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13040g00002 595 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 249 - -
Vium13040g00002 595 Gene3D NAC domain 31 176 IPR036093 GO:0003677|GO:0006355
Vium13040g00002 595 Pfam No apical meristem (NAM) protein 23 148 IPR003441 GO:0003677|GO:0006355
Vium13040g00002 595 SUPERFAMILY NAC domain 18 172 IPR036093 GO:0003677|GO:0006355
Vium13040g00002 595 FunFam Nac domain-containing protein 86 31 175 - -
Vium13040g00002 595 MobiDBLite consensus disorder prediction 508 535 - -
Vium13040g00002 595 ProSiteProfiles NAC domain profile. 22 172 IPR003441 GO:0003677|GO:0006355
Vium13040g00002 595 MobiDBLite consensus disorder prediction 503 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13040g00002 Vium-Chr13040 5657 9648 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13040g00002 15 483 NAC Transcription Factor Family AT1G33060 39.612 6.34e-91 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium13040g00002 NAM 3.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13040g00002 - - gmx:100777071 922.924