Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13035g00003 ATGAGGTCGACACAGATAATGGCTCTTCATCACCGCTTTTTGCTTGACACAAATTCAAGCACGCCTGCACCAAGTAACGTGAATAGGACAAGAGAGGCTTTCACAGGAGATGCAAATTTTGACACCAATATGGTGATTATATTGGCTGCGCTGCTTTGTGCGCTTATATGTGCTTTGGGACTCAACTCAATTGTGCGATGTGCTCTAAGATGTAGCCGCAGGTTTGCTTTCGAGACCCCAGAAGAGACTGCCGCACGTTTGGTGGCAAAAGGCCTAAAGAAGAGTGCATTGCATCAGATCCCTATAGTTGTTTATGGTTCTGGTAGTGTTGGTATTGCAGCCACAGATTGTCCCATTTGCCTTGGGGAGTTTCTGGATGGGGAGAAAGTAAGAGTGTTGCCAAAATGTAACCATGGATTCCATGTAAGGTGCATAGATACATGGCTCCTCTCACACTCCTCTTGTCCTAATTGCAGGCAATCTTTGCTTGAGCAACCTACCATTTCTGGAGCTGTTGGTGCAGGAAATAGTAATTATGGCGGAAATGCTTCAGCAGGACAGGAACACGTGTCTTTGTCAGTGGCTGTGGAAGAGGTTGGTTAA 603 0.461 MRSTQIMALHHRFLLDTNSSTPAPSNVNRTREAFTGDANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETPEETAARLVAKGLKKSALHQIPIVVYGSGSVGIAATDCPICLGEFLDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRQSLLEQPTISGAVGAGNSNYGGNASAGQEHVSLSVAVEEVG 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13035g00003 200 CDD RING-H2_EL5-like 116 159 - -
Vium13035g00003 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 167 IPR013083 -
Vium13035g00003 200 Pfam Ring finger domain 116 159 IPR001841 -
Vium13035g00003 200 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Vium13035g00003 200 SMART ring_2 117 158 IPR001841 -
Vium13035g00003 200 SMART FANCL_C_2 113 166 - -
Vium13035g00003 200 SUPERFAMILY RING/U-box 116 165 - -
Vium13035g00003 200 PANTHER RING-H2 FINGER PROTEIN ATL78 14 166 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13035g00003 Vium-Chr13035 18137 19778 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13035g00003 12 167 C3H Transcription Factor Family AT3G10910 61.818 1.53e-63 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13035g00003 - K19040 gmx:100787273 316.235