Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13031g00005 ATGATCTCAAACACAAAGCTCTCTTTTACTATTTTGTTGAATCAGAAACTCATCCATCTTCAAAGCCTCTTGTTCTCTGGCTCAATGGAGGTCTGCAATCTCTATCTTGGACCTGGCTGTTCTTCTCTTGGAGTGGGTGCATTCTCTGAAAATGGACCTTTTAGACCAAATGGGGAAGTTCTGATTAAAAACGAGTACAGTTGGAACAGAGAGACAAACATTTTGTATTTGGAGACACCAGTTGGAGTGGGGTTCTCTTATGCTAAAGGTGGCTCTTCCTATGAGACTCTGAATGATGAGACAACAGCCAGGGACAATCTTGTATTCTTGCAACGCTGGTTCAACAAGTTCCCTCAATTCAGGCACAGAGATCTGTTTCTAGCAGGTGAAAGCTATGCAGGGCATTATGTTCCACAACTTGCAAAGCTCATGATTGAAATAAACGAAAAGGAGAAGTTATTCAATCTGAAAGGCATCGCCTTGGGTAACCCAGTTCTAGAATATGCCACTGACTTGAATTCAAGGGCCGAGTTCTTCTGGTCTCACGGTTTGATATCTGATTCAACGTACAAATTGTTCACTACAGGCTGTAACTATTCCCGGTACGTCAGTGAATACTACAGAGACTCGATTTCTCCGCTTTGTTCAAAAGTTTTGAGGCAAGTAGCCAGAGAAACCAGTAAGTTTGTGGACAAATATGATGTCACCCTTGATGTTTGCATTTCATCAGTGCTTTCACAATCCAAAGCTATTTGTCCTCAAGGCCAAAAAACAAATGAGAGCATAGATGTATGTGTAGATGACAAAGTTACTAATTACTTGAACCGAAAAGATGTACAAGAGGCGCTCCATGCCAAGCTTGTCGGAGTCCGAAAATGGGATGTCTGCAGCAACAACAGCATTTTGAACTATGATATGCTCAACCTGGAGAAACCTACACTCCCTGTTGTTGGATCACTCATAAAATCTGGAGTTCGGGTCTTAATTTACAGTGGAGATCAAGATTCAGTAATTCCACTGACTGGAAGCCGCACCTTAGTTCAAAAGCTGGCTAGACAACTAGGACTGAATACAACAGTCCCCTACAGAGTATGGTTTGAAGGCCAACAGGTTGGTGGATGGACTCAAGTTTATGGCAGTATCCTCTCATTTGCTACTGTCAGAGGTGCCTCTCATGAAGCCCCTTTCTCTCAGCCTGAAAGATCATTTGTTTTGTTCAAGTCATTCTTGGAAGATAGGCCTCTGCCTGAAATTTTCTGA 1260 0.4246 MISNTKLSFTILLNQKLIHLQSLLFSGSMEVCNLYLGPGCSSLGVGAFSENGPFRPNGEVLIKNEYSWNRETNILYLETPVGVGFSYAKGGSSYETLNDETTARDNLVFLQRWFNKFPQFRHRDLFLAGESYAGHYVPQLAKLMIEINEKEKLFNLKGIALGNPVLEYATDLNSRAEFFWSHGLISDSTYKLFTTGCNYSRYVSEYYRDSISPLCSKVLRQVARETSKFVDKYDVTLDVCISSVLSQSKAICPQGQKTNESIDVCVDDKVTNYLNRKDVQEALHAKLVGVRKWDVCSNNSILNYDMLNLEKPTLPVVGSLIKSGVRVLIYSGDQDSVIPLTGSRTLVQKLARQLGLNTTVPYRVWFEGQQVGGWTQVYGSILSFATVRGASHEAPFSQPERSFVLFKSFLEDRPLPEIF 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13031g00005 419 FunFam Carboxypeptidase 313 412 - -
Vium13031g00005 419 ProSitePatterns Serine carboxypeptidases, histidine active site. 382 399 IPR033124 GO:0004185
Vium13031g00005 419 Pfam Serine carboxypeptidase 37 411 IPR001563 GO:0004185|GO:0006508
Vium13031g00005 419 ProSitePatterns Serine carboxypeptidases, serine active site. 127 134 IPR018202 GO:0004185
Vium13031g00005 419 Gene3D alpha/beta hydrolase 22 416 IPR029058 -
Vium13031g00005 419 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 36 399 IPR001563 GO:0004185|GO:0006508
Vium13031g00005 419 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 138 IPR001563 GO:0004185|GO:0006508
Vium13031g00005 419 PRINTS Carboxypeptidase C serine protease (S10) family signature 382 395 IPR001563 GO:0004185|GO:0006508
Vium13031g00005 419 PRINTS Carboxypeptidase C serine protease (S10) family signature 64 76 IPR001563 GO:0004185|GO:0006508
Vium13031g00005 419 PRINTS Carboxypeptidase C serine protease (S10) family signature 77 87 IPR001563 GO:0004185|GO:0006508
Vium13031g00005 419 SUPERFAMILY alpha/beta-Hydrolases 37 416 IPR029058 -
Vium13031g00005 419 FunFam Carboxypeptidase 26 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13031g00005 Vium-Chr13031 2796 5852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13031g00005 273 415 Calmodulin-binding Proteins AT2G22960 27.972 2.82e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13031g00005 K16297 - gmx:100800002 728.013