Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13031g00004 ATGAAGAACTTGCCAACATGGAAAACCATGGCAGTGACTGTGGTGTTGCTTCAATTGAGCTTTTCCTTGGAGATTTTCTGTCTCTCTAATCATGCAGATAGAATTGTTCGGCTTCCCGGGCAACCCAACACACGCTTCCAACAGTTCTCAGGATATGTTACAGTGGATGATCTCAAACACAAAGCTCTCTTTTACTATTTTGTTGAATCAGAAACTCATCCATCTTCAAAGCCTCTTGTTCTCTGGCTCAATGGAGGACCTGGCTGTTCTTCTCTTGGAGTGGGTGCATTCTCTGAAAATGGACCTTTTAGACCAAATGGGGAAGTTCTGATTAAAAACGAGTACAGTTGGAACAGAGAGACAAACATTTTGTATTTGGAGACACCAGTTGGAGTGGGGTTCTCTTATGCTAAAGGTGGCTCTTCCTATGAGACTCTGAATGATGAGACAACAGCCAGGGACAATCTTGTATTCTTGCAACGCTGGTTCAACAAGTTCCCTCAATTCAGGCACAGAGATCTGTTTCTAGCAGGTGAAAGCTATGCAGGGCATTATGTTCCACAACTTGCAAAGCTCATGATTGAAATAAACGAAAAGGAGAAGTTATTCAATCTGAAAGGCATCGCCTTGGGTAACCCAGTTCTAGAATATGCCACTGACTTGAATTCAAGGGCCGAGTTCTTCTGGTCTCACGGTTTGATATCTGATTCAACGTACAAATTGTTCACTACAGGCTGTAACTATTCCCGGTACGTCAGTGAATACTACAGAGACTCGATTTCTCCGCTTTGTTCAAAAGTTTTGAGGCAAGTAGCCAGAGAAACCAGTAAGTTTGTGGACAAATATGATGTCACCCTTGATGTTTGCATTTCATCAGTGCTTTCACAATCCAAAGCTATTTGTCCTCAAGGCCAAAAAACAAATGAGAGCATAGATGTATGTGTAGATGACAAAGTTACTAATTACTTGAACCGAAAAGATGTACAAGAGGCGCTCCATGCCAAGCTTGTCGGAGTCCGAAAATGGGATGTCTGCAGCAACAACAGCATTTTGAACTATGATATGCTCAACCTGGAGAAACCTACACTCCCTGTTGTTGGATCACTCATAAAATCTGGAGTTCGGGTCTTAATTTACAGTGGAGATCAAGATTCAGTAATTCCACTGACTGGAAGCCGCACCTTAGTTCAAAAGCTGGCTAGACAACTAGGACTGAATACAACAGTCCCCTACAGAGTATGGTTTGAAGGCCAACAGGTTGGTGGATGGACTCAAGTTTATGGCAGTATCCTCTCATTTGCTACTGTCAGAGGTGCCTCTCATGAAGCCCCTTTCTCTCAGCCTGAAAGATCATTTGTTTTGTTCAAGTCATTCTTGGAAGATAGGCCTCTGCCTGAAATTTTCTGA 1407 0.4279 MKNLPTWKTMAVTVVLLQLSFSLEIFCLSNHADRIVRLPGQPNTRFQQFSGYVTVDDLKHKALFYYFVESETHPSSKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGEVLIKNEYSWNRETNILYLETPVGVGFSYAKGGSSYETLNDETTARDNLVFLQRWFNKFPQFRHRDLFLAGESYAGHYVPQLAKLMIEINEKEKLFNLKGIALGNPVLEYATDLNSRAEFFWSHGLISDSTYKLFTTGCNYSRYVSEYYRDSISPLCSKVLRQVARETSKFVDKYDVTLDVCISSVLSQSKAICPQGQKTNESIDVCVDDKVTNYLNRKDVQEALHAKLVGVRKWDVCSNNSILNYDMLNLEKPTLPVVGSLIKSGVRVLIYSGDQDSVIPLTGSRTLVQKLARQLGLNTTVPYRVWFEGQQVGGWTQVYGSILSFATVRGASHEAPFSQPERSFVLFKSFLEDRPLPEIF 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13031g00004 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Vium13031g00004 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Vium13031g00004 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 431 444 IPR001563 GO:0004185|GO:0006508
Vium13031g00004 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Vium13031g00004 468 Gene3D - 314 348 - -
Vium13031g00004 468 FunFam Carboxypeptidase 362 461 - -
Vium13031g00004 468 Pfam Serine carboxypeptidase 40 460 IPR001563 GO:0004185|GO:0006508
Vium13031g00004 468 Gene3D - 362 460 - -
Vium13031g00004 468 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 36 448 IPR001563 GO:0004185|GO:0006508
Vium13031g00004 468 ProSitePatterns Serine carboxypeptidases, histidine active site. 431 448 IPR033124 GO:0004185
Vium13031g00004 468 SUPERFAMILY alpha/beta-Hydrolases 37 465 IPR029058 -
Vium13031g00004 468 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Vium13031g00004 468 FunFam Carboxypeptidase 28 465 - -
Vium13031g00004 468 Gene3D alpha/beta hydrolase 29 291 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13031g00004 Vium-Chr13031 2796 6488 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13031g00004 322 464 Calmodulin-binding Proteins AT2G22960 27.972 3.71e-16 74.7