Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13031g00003 ATGAAGAACTTGCCAACATGGAAAACCATGGCAGTGACTGTGGTGTTGCTTCAATTGAGCTTTTCCTTGGAGATTTTCTGTCTCTCTAATCATGCAGATAGAATTGTTCGGCTTCCCGGGCAACCCAACACACGCTTCCAACAGTTCTCAGGATATGTTACAGTGGATGATCTCAAACACAAAGCTCTCTTTTACTATTTTGTTGAATCAGAAACTCATCCATCTTCAAAGCCTCTTGTTCTCTGGCTCAATGGAGGACCTGGCTGTTCTTCTCTTGGAGTGGGTGCATTCTCTGAAAATGGACCTTTTAGACCAAATGGGGAAGTTCTGATTAAAAACGAGTACAGTTGGAACAGAGAGACAAACATTTTGTATTTGGAGACACCAGTTGGAGTGGGGTTCTCTTATGCTAAAGGTGGCTCTTCCTATGAGACTCTGAATGATGAGACAACAGCCAGGGACAATCTTGTATTCTTGCAACGCTGGTTCAACAAGTTCCCTCAATTCAGGCACAGAGATCTGTTTCTAGCAGGTGAAAGCTATGCAGGGCATTATGTTCCACAACTTGCAAAGCTCATGATTGAAATAAACGAAAAGGAGAAGTTATTCAATCTGAAAGGCATCGCCTTGGGTAACCCAGTTCTAGAATATGCCACTGACTTGAATTCAAGGGCCGAGTTCTTCTGGTCTCACGGTTTGATATCTGATTCAACGTACAAATTGTTCACTACAGGCTGTAACTATTCCCGGTACGTCAGTGAATACTACAGAGACTCGATTTCTCCGCTTTGTTCAAAAGTTTTGAGGCAAGTAGCCAGAGAAACCAGTAAGTTTGTGGACAAATATGATGTCACCCTTGATGTTTGCATTTCATCAGTGCTTTCACAATCCAAAGCTATTTGTCCTCAAGGCCAAAAAACAAATGAGAGCATAGATGTATGTGTAGATGACAAAGTTACTAATTACTTGAACCGAAAAGATGTACAAGAGGCGCTCCATGCCAAGCTTGTCGGAGTCCGAAAATGGGATGTCTGCAGCAACATTTTGAACTATGATATGCTCAACCTGGAGAAACCTACACTCCCTGTTGTTGGATCACTCATAAAATCTGGAGTTCGGGTCTTAATTTACAGTGGAGATCAAGATTCAGTAATTCCACTGACTGGAAGCCGCACCTTAGTTCAAAAGCTGGCTAGACAACTAGGACTGAATACAACAGTCCCCTACAGAGTATGGTTTGAAGGCCAACAGGTTGGTGGATGGACTCAAGTTTATGGCAGTATCCTCTCATTTGCTACTGTCAGAGGTGCCTCTCATGAAGCCCCTTTCTCTCAGCCTGAAAGATCATTTGTTTTGTTCAAGTCATTCTTGGAAGATAGGCCTCTGCCTGAAATTTTCTGA 1401 0.4276 MKNLPTWKTMAVTVVLLQLSFSLEIFCLSNHADRIVRLPGQPNTRFQQFSGYVTVDDLKHKALFYYFVESETHPSSKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGEVLIKNEYSWNRETNILYLETPVGVGFSYAKGGSSYETLNDETTARDNLVFLQRWFNKFPQFRHRDLFLAGESYAGHYVPQLAKLMIEINEKEKLFNLKGIALGNPVLEYATDLNSRAEFFWSHGLISDSTYKLFTTGCNYSRYVSEYYRDSISPLCSKVLRQVARETSKFVDKYDVTLDVCISSVLSQSKAICPQGQKTNESIDVCVDDKVTNYLNRKDVQEALHAKLVGVRKWDVCSNILNYDMLNLEKPTLPVVGSLIKSGVRVLIYSGDQDSVIPLTGSRTLVQKLARQLGLNTTVPYRVWFEGQQVGGWTQVYGSILSFATVRGASHEAPFSQPERSFVLFKSFLEDRPLPEIF 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13031g00003 466 Pfam Serine carboxypeptidase 40 458 IPR001563 GO:0004185|GO:0006508
Vium13031g00003 466 ProSitePatterns Serine carboxypeptidases, histidine active site. 429 446 IPR033124 GO:0004185
Vium13031g00003 466 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 36 446 IPR001563 GO:0004185|GO:0006508
Vium13031g00003 466 Gene3D - 360 458 - -
Vium13031g00003 466 FunFam Carboxypeptidase 360 459 - -
Vium13031g00003 466 Gene3D - 314 349 - -
Vium13031g00003 466 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Vium13031g00003 466 Gene3D alpha/beta hydrolase 29 291 IPR029058 -
Vium13031g00003 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 429 442 IPR001563 GO:0004185|GO:0006508
Vium13031g00003 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Vium13031g00003 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Vium13031g00003 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Vium13031g00003 466 FunFam Carboxypeptidase 28 463 - -
Vium13031g00003 466 SUPERFAMILY alpha/beta-Hydrolases 37 463 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13031g00003 Vium-Chr13031 2796 6490 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13031g00003 322 462 Calmodulin-binding Proteins AT2G22960 28.369 4.88e-16 74.3