Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13031g00001 ATGAAGAACTTGCCAACATGGAAAACCATGGCAGTGACTGTGGTGTTGCTTCAATTGAGCTTTTCCTTGGAGATTTTCTGTCTCTCTAATCATGCAGATAGAATTGTTCGGCTTCCCGGGCAACCCAACACACGCTTCCAACAGTTCTCAGGATATGTTACAGTGGATGATCTCAAACACAAAGCTCTCTTTTACTATTTTGTTGAATCAGAAACTCATCCATCTTCAAAGCCTCTTGTTCTCTGGCTCAATGGAGGACCTGGCTGTTCTTCTCTTGGAGTGGGTGCATTCTCTGAAAATGGACCTTTTAGACCAAATGGGGAAGTTCTGATTAAAAACGAGTACAGTTGGAACAGAGAGACAAACATTTTGTATTTGGAGACACCAGTTGGAGTGGGGTTCTCTTATGCTAAAGGTGGCTCTTCCTATGAGACTCTGAATGATGAGACAACAGCCAGGGACAATCTTGTATTCTTGCAACGCTGGTTCAACAAGTTCCCTCAATTCAGGCACAGAGATCTGTTTCTAGCAGGTGAAAGCTATGCAGGGCATTATGTTCCACAACTTGCAAAGCTCATGATTGAAATAAACGAAAAGGAGAAGTTATTCAATCTGAAAGGCATCGCCTTGGGTAACCCAGTTCTAGAATATGCCACTGACTTGAATTCAAGGGCCGAGTTCTTCTGGTCTCACGGTTTGATATCTGATTCAACGTACAAATTGTTCACTACAGGCTGTAACTATTCCCGGTACGTCAGTGAATACTACAGAGACTCGATTTCTCCGCTTTGTTCAAAAGTTTTGAGGCAAGTAGCCAGAGAAACCAGTAAGTTTGTGGACAAATATGATGTCACCCTTGATGTTTGCATTTCATCAGTGCTTTCACAATCCAAAGCTATTTGTCCTCAAGGCCAAAACTTGATGCCTCTTGCCAAACAGAAAACAAATGAGAGCATAGATGTATGTGTAGATGACAAAGTTACTAATTACTTGAACCGAAAAGATGTACAAGAGGCGCTCCATGCCAAGCTTGTCGGAGTCCGAAAATGGGATGTCTGCAGCAACATTTTGAACTATGATATGCTCAACCTGGAGAAACCTACACTCCCTGTTGTTGGATCACTCATAAAATCTGGAGTTCGGGTCTTAATTTACAGTGGAGATCAAGATTCAGTAATTCCACTGACTGGAAGCCGCACCTTAGTTCAAAAGCTGGCTAGACAACTAGGACTGAATACAACAGTCCCCTACAGAGTATGGTTTGAAGGCCAACAGGTTGGTGGATGGACTCAAGTTTATGGCAGTATCCTCTCATTTGCTACTGTCAGAGGTGCCTCTCATGAAGCCCCTTTCTCTCAGCCTGAAAGATCATTTGTTTTGTTCAAGTCATTCTTGGAAGATAGGCCTCTGCCTGAAATTTTCTGA 1425 0.4281 MKNLPTWKTMAVTVVLLQLSFSLEIFCLSNHADRIVRLPGQPNTRFQQFSGYVTVDDLKHKALFYYFVESETHPSSKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGEVLIKNEYSWNRETNILYLETPVGVGFSYAKGGSSYETLNDETTARDNLVFLQRWFNKFPQFRHRDLFLAGESYAGHYVPQLAKLMIEINEKEKLFNLKGIALGNPVLEYATDLNSRAEFFWSHGLISDSTYKLFTTGCNYSRYVSEYYRDSISPLCSKVLRQVARETSKFVDKYDVTLDVCISSVLSQSKAICPQGQNLMPLAKQKTNESIDVCVDDKVTNYLNRKDVQEALHAKLVGVRKWDVCSNILNYDMLNLEKPTLPVVGSLIKSGVRVLIYSGDQDSVIPLTGSRTLVQKLARQLGLNTTVPYRVWFEGQQVGGWTQVYGSILSFATVRGASHEAPFSQPERSFVLFKSFLEDRPLPEIF 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13031g00001 474 FunFam Carboxypeptidase 368 467 - -
Vium13031g00001 474 Gene3D - 322 357 - -
Vium13031g00001 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Vium13031g00001 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Vium13031g00001 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Vium13031g00001 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 437 450 IPR001563 GO:0004185|GO:0006508
Vium13031g00001 474 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 36 454 IPR001563 GO:0004185|GO:0006508
Vium13031g00001 474 Gene3D alpha/beta hydrolase 29 291 IPR029058 -
Vium13031g00001 474 FunFam Carboxypeptidase 28 471 - -
Vium13031g00001 474 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Vium13031g00001 474 ProSitePatterns Serine carboxypeptidases, histidine active site. 437 454 IPR033124 GO:0004185
Vium13031g00001 474 SUPERFAMILY alpha/beta-Hydrolases 37 471 IPR029058 -
Vium13031g00001 474 Gene3D - 368 466 - -
Vium13031g00001 474 Pfam Serine carboxypeptidase 40 466 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13031g00001 Vium-Chr13031 2796 6493 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13031g00001 330 470 Calmodulin-binding Proteins AT2G22960 28.369 4.64e-16 74.7