Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1302g00016 ATGGGTGCTTGTTGGAGCAGTGGGACGAAGGCTGTGAGCCCTTCCAGTGCAGGGTTCACTTCTAGAAGTGTGAGCAGAGAGGGCTATGACATCCATTCAAGTAGCAGGAACTCATCAGCCTCCATACCCATGACCCCTCGGAGTGAGGGTGAGATCTTACAATCTTCAAATTTGAAAAGCTACAGCTACAATGACCTAAGAATAGCAACAAAACATTTCAGCCCAGACAATGTCTTAGGGGAAGGTGGATTTGGTTCAGTTTTTAAGGGTTGGATTGATGAACATTCGCTTTCTGTTACCAAGCCTGGTATAGGCATGGTTGTTGCTGTGAAGAAACTTAACCAAGAGGGGTTCCAGGGTCACAAGGAATGGTTGGCTGAAATCAACTATCTCGGGCAACTGCAGCATCCTAATCTTGTCAAGTTGATAGGCTACTGCTTAGAGGATCAGCACAGGCTTCTAGTTTATGAATATATGCCAAAGGGCAGTGTGGAGAATCATCTATTCAGGAGGGGGTCTCATTTTCAGCAGCTTTCTTGGACATTAAGATTGAAAATATCCCTTGGGGCTGCTAGGGGTCTTGCTTTTCTCCATAACTCAGAAACTAAAGTCATATACAGAGACTTTAAGACTTCTAATATCCTGCTTGATACGAACTATAATGCCAGACTTTCTGATTTTGGGCTGGCCAGAGATGGACCCACTGGTGATAAGAGCCATGTTTCTACAAGGGTCATGGGAACACATGGATATGCAGCACCAGAGTATCTAGCAACAGGTCACCTCACTGCCAAGAGTGATGTGTATAGTTTTGGAGTAGTACTTTTGGAAATGTTATCAGGAAGACGTGCCATAGACAAGAATAGGCCATCTGGGGAACAGTGCTTAGTTGAATGGGCAAAACCTTACCTTGCTAACAAAAGAAGGGTTTTTCGTGTAATGGATAGTCGTCTAGAAGGTCAGTATTCCCTTAACCAAGCTCAAAGAGCAGCCACTCTTTCTTTTCAGTGTCTTTCTGTAGAGCCCAAATACAGGCCAAACATGGATGAGGTGGTGAGAGTATTGGAGCAAATACGTGACTCAAATGATCAAGTGAAAAATGGTGATCATAATAAAAAGCGTCGACTAAGTGGCTCTGCCTCTGGCCATGGCCACCCAAATGGACTCCCTGCATCTGCTAGCACAGGAAGTTCTGATGCTCCAAAAAAGTTGGCTTATCCAAGGCCTTCTGCTTCTTTTCTGTATGCTTAG 1251 0.446 MGACWSSGTKAVSPSSAGFTSRSVSREGYDIHSSSRNSSASIPMTPRSEGEILQSSNLKSYSYNDLRIATKHFSPDNVLGEGGFGSVFKGWIDEHSLSVTKPGIGMVVAVKKLNQEGFQGHKEWLAEINYLGQLQHPNLVKLIGYCLEDQHRLLVYEYMPKGSVENHLFRRGSHFQQLSWTLRLKISLGAARGLAFLHNSETKVIYRDFKTSNILLDTNYNARLSDFGLARDGPTGDKSHVSTRVMGTHGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGRRAIDKNRPSGEQCLVEWAKPYLANKRRVFRVMDSRLEGQYSLNQAQRAATLSFQCLSVEPKYRPNMDEVVRVLEQIRDSNDQVKNGDHNKKRRLSGSASGHGHPNGLPASASTGSSDAPKKLAYPRPSASFLYA 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1302g00016 416 ProSiteProfiles Protein kinase domain profile. 73 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1302g00016 416 SUPERFAMILY Protein kinase-like (PK-like) 39 355 IPR011009 -
Vium1302g00016 416 MobiDBLite consensus disorder prediction 359 416 - -
Vium1302g00016 416 FunFam Serine/threonine-protein kinase BIK1 40 158 - -
Vium1302g00016 416 MobiDBLite consensus disorder prediction 359 376 - -
Vium1302g00016 416 ProSitePatterns Protein kinases ATP-binding region signature. 79 112 IPR017441 GO:0005524
Vium1302g00016 416 MobiDBLite consensus disorder prediction 1 51 - -
Vium1302g00016 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Vium1302g00016 416 PANTHER OS01G0588500 PROTEIN-RELATED 37 359 - -
Vium1302g00016 416 FunFam Probable serine/threonine-protein kinase PBL8 159 375 - -
Vium1302g00016 416 CDD STKc_IRAK 79 358 - -
Vium1302g00016 416 Gene3D Transferase(Phosphotransferase) domain 1 159 382 - -
Vium1302g00016 416 Gene3D Phosphorylase Kinase; domain 1 48 158 - -
Vium1302g00016 416 Pfam Protein kinase domain 76 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1302g00016 Vium-Chr1302 163400 166592 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1302g00016 34 355 Glycoside Hydrolase AT3G07070 45.646 4.29e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium1302g00016 Pkinase 4.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1302g00016 - - gmx:100818744 741.495