Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1302g00008 ATGGAATTGGCGTCTTCATCATCCAAACTGCAACGGAAGTACGATGTGCTCATCAACTTCACTGAAATAGAAGACATTCGCAAGAAATTTGTTTCTCATCTCGATTCTGCCCTCTCTGCTAATGGGCTCACCACTTTGCTTCACCACGAGAATGCATTGCAGCCATTGCACATCCAACAACCTATTCTTCATCTGTGTCGGGTAGCAATTGTTGTTTTCACCAAAACTTATTCTCAATCTGCTTGGTGTCTTCATCAGCTTCAACAAATAATTGAATGGCACCAAACTTATTCCCGACATGTTCTGCCCGTATATTACGAAATTGAGCCATCTGATGTACGTCTTCAGAAGGGTGATTTTGGAGAAGCCTTTAAAGCAACTGCACACCAAACATTTTCTGAACAACAACTGGAGGATGGCGTGTCCAGGTGGAGCCACGCACTCACCAAAGCTGCGAATTTCTTTGGATGGGATGAGAGCAATCACAGGAGTGATGCAGAACTAGTGGACACAATTGTTAAGAGCGTTCTTAATTTACCAGTCTTGTCTGTTACTAAATTTCCGGTTGGATTGCAATCCCAAGTGGAAGATGTGATTCGAACTATAAAAAATAAATCAATGGAAGTGTGTAGGATAGGGATATGTGGAATGGAAGGATCGGGTAAAACGACCCTTGCCAAAGCCATCTACAATCAAATTCATGGTACATTCATGGAGAAAAGTTTCATTGAAGATGTTTCAGAAGTCAATCGAACAAGAGGGTGTATTCATTTACAAGCACAACTTCTTTCAGATGTCCTAAAATCAAGAGTGGAGATTCATAGCGTTGAGATGGGAACAAGTATGATTCAGGAAAGACTTCATGGGAAAAGGATGCTAATTGTACTCGACGATATGATCAATGAGTACTATCCATTATTCGACCTTAGGAAATGTTGTGCATGGTTCGGTAAAGGAACTGTAATTATCATCACAACAAAAGATGTAGAGCTACTGAGGAAGCACCAAGTTGATTCTATTTTTCGGATGAATCTAATGAATGCAAATGAGTCCCTTGAGCTTTTTAGTTGGCATGCATTTCGAGAAGCAAAACCAAAAGAATACAGCGACCTTGCAAAAACAGTAGTTACTTATTGTGGAGGACTACCTCTTGCGCTTGAACTCATTGGAGCTTGTTTATTTGAAAGGACGAAAGAAGAATGGAACAGAGTATTGTTAAGATTAGACAATAAGATTTATTCTTTGATGTATGTTGTTCCACTGATATTGAAAATAAGCTTCGACGGTTTAAGGAATAAAATTGAAAAAGATTTATTCCTTGATATATGTTGTTTCTTTGTTGGTAAAGGCAGAGCCTATGTTAAGAAGATGCTGAATGGCTGTGGAGTTGACCCTGATAGTGGAATAAGAGTTCTGATAGAGCGTAACCTCATAAAAGTTAAAAAGAACAACAAATTTGGAATGCATCCTTTGCTACGAGATATGGGAAGAGGAATTATTCGTGAAAATTCAAAAGAGGAACCTGGGAAGAACAGTCGAATGTGGTATGATAGTGATGCAGAATATGCACTGTCAGAGAATACAGTAAGAACAATCTCGATCTATGGTTTTGAAACTTCTTTTTGGAAGTGA 1632 0.3897 MELASSSSKLQRKYDVLINFTEIEDIRKKFVSHLDSALSANGLTTLLHHENALQPLHIQQPILHLCRVAIVVFTKTYSQSAWCLHQLQQIIEWHQTYSRHVLPVYYEIEPSDVRLQKGDFGEAFKATAHQTFSEQQLEDGVSRWSHALTKAANFFGWDESNHRSDAELVDTIVKSVLNLPVLSVTKFPVGLQSQVEDVIRTIKNKSMEVCRIGICGMEGSGKTTLAKAIYNQIHGTFMEKSFIEDVSEVNRTRGCIHLQAQLLSDVLKSRVEIHSVEMGTSMIQERLHGKRMLIVLDDMINEYYPLFDLRKCCAWFGKGTVIIITTKDVELLRKHQVDSIFRMNLMNANESLELFSWHAFREAKPKEYSDLAKTVVTYCGGLPLALELIGACLFERTKEEWNRVLLRLDNKIYSLMYVVPLILKISFDGLRNKIEKDLFLDICCFFVGKGRAYVKKMLNGCGVDPDSGIRVLIERNLIKVKKNNKFGMHPLLRDMGRGIIRENSKEEPGKNSRMWYDSDAEYALSENTVRTISIYGFETSFWK 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1302g00008 543 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 157 IPR035897 -
Vium1302g00008 543 SUPERFAMILY "Winged helix" DNA-binding domain 421 520 IPR036390 -
Vium1302g00008 543 Pfam TIR domain 13 177 IPR000157 GO:0007165
Vium1302g00008 543 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 519 IPR044974 GO:0006952
Vium1302g00008 543 Gene3D - 6 175 IPR035897 -
Vium1302g00008 543 Pfam NB-ARC domain 193 412 IPR002182 GO:0043531
Vium1302g00008 543 PRINTS Disease resistance protein signature 211 226 - -
Vium1302g00008 543 PRINTS Disease resistance protein signature 379 393 - -
Vium1302g00008 543 PRINTS Disease resistance protein signature 286 300 - -
Vium1302g00008 543 ProSiteProfiles TIR domain profile. 12 180 IPR000157 GO:0007165
Vium1302g00008 543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 442 IPR027417 -
Vium1302g00008 543 Gene3D - 176 340 IPR027417 -
Vium1302g00008 543 SMART till_3 13 154 IPR000157 GO:0007165
Vium1302g00008 543 Gene3D - 346 431 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1302g00008 Vium-Chr1302 30429 32255 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1302g00008 12 522 WRKY Transcription Factor Family AT4G12020 27.573 1.86e-52 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1302g00008 - - vun:114165880 752.666