Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13021g00008 ATGGGGAGAATGGGACAAGACTCAGACCCCAAGTCCAAGTTGGTATTAGAGATTTGCTCCATTTCCACGCGTTCTGTTGTATGTGTTCATCATAAACTTCTCTCAGAATCAGCCAACACAACTTTCGTTGACTGGTATTGCATTCTTGGAGTGGAAGAAAATGCAGGGGTGAGTGCCATCCGTAAGAGGTACCATAAACTGGCCTTACACGTTCACCCGGATAAGAATAAGCACCCCAAGGCTGAAATTGCTTTCAAGCTCGTTTCTGAGGCGTATGCATGTTTATCTAATGCAGCAAAGAGAAAAGCCTTTGACTTGGAGAGATATAAGCATTTCTGCATCGAGTGCAAAAGAATTCCGTATACATCCAGTAATGTCCCTGTCAATTCAGGGGGACGAGGTTTTAGGGCATGGAATATCATCACAAGATCAAGATCTTTTAAACTTTGGAGAAATATTAGGGAAATGAGAGAAAGATTCATGGACGAGGCTAATGTGATAGAGAACTGTTTGCGAACAAATTCAATGTCAAGGAAAGAATCTCCAGGCCAGAATCCGGTTGGCTTTCTACATAGAAGCAAGTCGCTTCATAGATTTGAGAAAGAAACCCCTGTTTTCAATCCGTCGGATTATTTGTACCAAGGCTACCCTCACCTGAGGAGCAATATTTACAAGAATTCTTCAACTTTTTGGTACTTGCAGAGAAATAGTATGCTTCACAGTGAAAAGGGAGGAGCGCTGCATGCCTCCCCTGTTTTTGAGGTCCAATCTAGGAGTTTGTTTGCAAGCAAATTCGCTTTTGTCCCATCAAAATGCTAG 819 0.4249 MGRMGQDSDPKSKLVLEICSISTRSVVCVHHKLLSESANTTFVDWYCILGVEENAGVSAIRKRYHKLALHVHPDKNKHPKAEIAFKLVSEAYACLSNAAKRKAFDLERYKHFCIECKRIPYTSSNVPVNSGGRGFRAWNIITRSRSFKLWRNIREMRERFMDEANVIENCLRTNSMSRKESPGQNPVGFLHRSKSLHRFEKETPVFNPSDYLYQGYPHLRSNIYKNSSTFWYLQRNSMLHSEKGGALHASPVFEVQSRSLFASKFAFVPSKC 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13021g00008 272 ProSitePatterns Nt-dnaJ domain signature. 85 104 IPR018253 -
Vium13021g00008 272 PRINTS DnaJ domain signature 64 79 IPR001623 -
Vium13021g00008 272 PRINTS DnaJ domain signature 80 100 IPR001623 -
Vium13021g00008 272 PRINTS DnaJ domain signature 46 64 IPR001623 -
Vium13021g00008 272 ProSiteProfiles dnaJ domain profile. 44 108 IPR001623 -
Vium13021g00008 272 Pfam DnaJ domain 44 105 IPR001623 -
Vium13021g00008 272 SMART dnaj_3 43 100 IPR001623 -
Vium13021g00008 272 FunFam Chaperone protein dnaJ 49 isoform A 43 166 - -
Vium13021g00008 272 SUPERFAMILY Chaperone J-domain 40 108 IPR036869 -
Vium13021g00008 272 CDD DnaJ 44 97 IPR001623 -
Vium13021g00008 272 Gene3D DnaJ domain 30 118 IPR036869 -
Vium13021g00008 272 PANTHER BNAC03G44070D PROTEIN 24 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13021g00008 Vium-Chr13021 31679 33504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13021g00008 4 105 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.945 5.59e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13021g00008 - - gmx:100801809 487.648