Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13021g00002 ATGGTTCTTTTTCCATCTTTTGTGAATGGATTGGCAAGAACCGTGTCAATCAAGAAGGAGAAGAATTGTAAAAGGGAAGATGGAAGGACAGCTGCAGAAGAATTGGCAAAGGAAGCGAGGAAAAGTGAACTGTTACTGAGTTCATCTGGAGTTGTTAGGTCGACAAAGGCCAACAATTTTGCTTCTGTGTTCACTAATAGGGGACGGAAAGGAGTGAATCAGGATCGTCTTCTTGTTTGGGAGGAATTTGGATGCCAACAAGACATTATGTTCTGTGGAGTTTTTGATGGGCATGGCCCTTGGGGACACTTTGTAGCAAAAAGCGTCAAGAAACTAGTGCCAACAATTTTGCTGTGCAATTGGCAAGAAAATCTGGCTGCAACATCACTTGACCTGGATTTTAAGATGGAAGCAGACAGACATATCCATGGATTGAACGTGTGGAAGCAGTCCTACATCAAGACTTATGCTGCGGTTGATCAGGATCTGAAGCAGCAAACCGGGTTCGATTCATTTCTTAGTGGCACAACAGCATTGACAATTATCAAACAGGGTGAATATCTTATTACAGCAAACATAGGTGATTCTAGGGCTGTCTTGGCAACCACTTCAGAGGATGGCACATTAACTCCACATCAGCTTACCACTGACTTCAAGCCAAATTTACCACAGGAAGCTGAACGCATAACACAATGCAGAGGGCAGGTATTTAGTTTGGAAGATGAACCAGGAGTGTACAGGGTGTGGATGCCAAATGGTAAACCTCCAGGACTAGCAATATCAAGAGCTTTAGGAGATCACTGCATGAAGGACTTTGGACTAATCTCTGTGCCTGATGTCACACAAACAAAAATTACAACCAGGGATCAATTTGTCATATTGGCAACAGATGGGGTATGGGATGTTATATCCAATCAGGAAGCAGTGGAGATTGTTTCTGCATCACCACATAAAGAAAAAGCAGCTCAAAAGCTTGTTAAATGCGCCATACGTGAATGGAAGCGGAAGAGAAGTGGCATTGCTATGGATGACATGTCAGCTATTTGCCTCTTCTTTCACTCCTTCCCTTCTCAAAAACTCCCAGCCATTAAAACTGTTGATTAA 1104 0.4293 MVLFPSFVNGLARTVSIKKEKNCKREDGRTAAEELAKEARKSELLLSSSGVVRSTKANNFASVFTNRGRKGVNQDRLLVWEEFGCQQDIMFCGVFDGHGPWGHFVAKSVKKLVPTILLCNWQENLAATSLDLDFKMEADRHIHGLNVWKQSYIKTYAAVDQDLKQQTGFDSFLSGTTALTIIKQGEYLITANIGDSRAVLATTSEDGTLTPHQLTTDFKPNLPQEAERITQCRGQVFSLEDEPGVYRVWMPNGKPPGLAISRALGDHCMKDFGLISVPDVTQTKITTRDQFVILATDGVWDVISNQEAVEIVSASPHKEKAAQKLVKCAIREWKRKRSGIAMDDMSAICLFFHSFPSQKLPAIKTVD 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13021g00002 367 ProSiteProfiles PPM-type phosphatase domain profile. 60 352 IPR001932 -
Vium13021g00002 367 PANTHER PROTEIN PHOSPHATASE 42 350 IPR015655 GO:0004722|GO:0006470
Vium13021g00002 367 Gene3D - 47 354 IPR036457 -
Vium13021g00002 367 FunFam Probable protein phosphatase 2C 34 51 354 - -
Vium13021g00002 367 SUPERFAMILY PP2C-like 53 354 IPR036457 -
Vium13021g00002 367 Pfam Protein phosphatase 2C 82 331 IPR001932 -
Vium13021g00002 367 CDD PP2Cc 59 352 IPR001932 -
Vium13021g00002 367 SMART PP2C_4 51 350 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13021g00002 Vium-Chr13021 12057 14196 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13021g00002 1 353 PP2C-type Phosphatase Gene Family AT3G05640 58.028 1.66e-158 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13021g00002 - - gmx:100817397 658.677