Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1300g00010 ATGTCCCAAGGATCTCCCCTGCAAGACAACAAAGAACCCTCGCCGGAACCCGATTCGCACAAGGAGGAAGCAACCACCAACACCGCCGCTACTGCCGCCGCCGATGCTGCTCCTCCCGCACCCACCAGGAACCGCCCCTCTCGCGCCTGTACCATTCGCACGGCTGCACGCCTCTATTCGGCGTCGCAGCCGGCCAGGCCCAAGGCTGCAAAGAGGGAGCCTCGCCGCGAGGAGTCGCCCCAGCCGCCGTCGCCGCAGCCGCAGCAATGCGGCAAGATCGTGACGCCGCTGGTGGAACCGCCCCCGCCTGCACAGTTGCCGCGTTACAACCTCCGGTCTATGTGGGAATTGGCTTCAATACTCAATTTTTTGAATCTTTTTAGGCATCTTTTGAATATTTCAGTAGAATTCTCGGCTGAAGAGTTTGAGACGGCTTTGCTCACTCCCAATGACACATTGAGTGATATACATATGCCTTTGCTAAAGGCAATTCCTCCCATTACACGAATGGCACTCTCACGTGATACTTGGATAACCGTATTATGCAGAAAATTAAGAGATTGGTGGCACTGGGTTGCGGATGGGGATCTTCCTATTGTTGCTTCACACGGAGCGGAGATTGAAGTATATAAATCACTTGATCCAGGGGTTCGTGTGGTCATCTTAAAAGCATTATGTGACATTCGTGTTGAGCAAGAAGATATCAGGAGTTACATTGACAGCTCAATCAAGCATGGCATTCCACTTTCAACATTTCGCAAGGAGCGTATTGGTGGTGATTCGCATGGAGTTTCTTATTGGTATGAAGATGACCAAAATATTGGTCAGAGGTTGTATCGGGAGATAAGGAAAACTGAAGTGGTTCAAATGAAGAAAGGGAAACCAAGAGGTTCCCAGGTTTTTTCTAATACAACCTACCAGTGGGAAACAGTTGCTACCAATTTTGATGAATTTCTGGATGTTTCTGAGAAGCTTTTCACAAGTAAAAACAGAACGGAGGTTTCTGTAGGGAAGAAGGTGAAGATAGACATGCTTCCTGAAATTGAGAAGGTTCACAAGAGAAAGGAGAGATTGATGAAAAAACAACACAGACAAGCTCTTCTTCTTGATAATTTCTTAGGTGTTGATGGGCTTGCCCTAGGGCGTTCACTACGTGATAGGAAACCTGTTACCTACACTTTTGATGATTATGATCGGTCCATCAACGAGGCAATTAAGATAACCAAACGGAAGCCACCGTCCCCAGAAGCTATACCGAGAAGAGAACCAGGATCAAAACCGGAAGCTTTATCCAATGGTAAATGGAGTGGTCCTTCCCCTTCTTATGACCCTCAAGAACTAAATTTTGGCATGCTGTCTCCAAAATCACCAGACTTCGATGATATGGAGGAAGATAATCAAACTGACATAATGGACTTGGATAGAAGCAATCGACGAAGACAGAAGCCTAAACGGTATTCAGAGAAAGAGTTTGTTGAAGCATTGTCAGATAATGAGGCTGACTATGACAGTGATGATGATATTGTGGGAGAAGCAGTGTATTCTGAAGAGTATCTTCAGAAACGCAAGCAGAGAAGGAAGGCTTCTAGTAGCTCTGGCTCTGAAGGAGACGAAGAATATAATTGGAATGAAGATAACATCGAAGATGAAGAAGAGGACGATGAAGAAGATTCCATGAGTGTCAGTGAGGAGAGTGACAAGCCCCGTAAATTCAAGCGACTGGCGGGCCGAACTAGGAGGGAAACTAAACTAAGGTCTGTGGGTGAGATTCAATCAGGTCTAAGACGCAGTAAGAGGGCAACACAAAAACGTATAAATTACCGGCAGTTAGAGATGTCTGATTCAGAAACCGAGTTCGTTAAACCTGACAAGTCTAATGCAAATGCATCAGATGATCACTCAGATCCTTCTGAGAATGGAGATTATATGATGGAAAGTGAAGATTCAGATGGCAATGACGATGAAGAACAAGAAACCAAAGATGTGGAGCCTGTTACTTACCCTGCAGAAGGGAACAACCAATATCCTGCTGTAGAGGAGAATGAACAAAGCAAAATCCAGCCTCCTGAAAAATCTAGTAGTCCAGGACAGGAGGAAGTTGAAGGCACCACAAAGCGACGATTCCTTGATTTGAATGAGCTTGCCCCTAGCTCAGGTTTTGATGATGCTCCAAATACAACAAGCAAAGATGAAGGCAATGAAGATTTGTGA 2211 0.4582 MSQGSPLQDNKEPSPEPDSHKEEATTNTAATAAADAAPPAPTRNRPSRACTIRTAARLYSASQPARPKAAKREPRREESPQPPSPQPQQCGKIVTPLVEPPPPAQLPRYNLRSMWELASILNFLNLFRHLLNISVEFSAEEFETALLTPNDTLSDIHMPLLKAIPPITRMALSRDTWITVLCRKLRDWWHWVADGDLPIVASHGAEIEVYKSLDPGVRVVILKALCDIRVEQEDIRSYIDSSIKHGIPLSTFRKERIGGDSHGVSYWYEDDQNIGQRLYREIRKTEVVQMKKGKPRGSQVFSNTTYQWETVATNFDEFLDVSEKLFTSKNRTEVSVGKKVKIDMLPEIEKVHKRKERLMKKQHRQALLLDNFLGVDGLALGRSLRDRKPVTYTFDDYDRSINEAIKITKRKPPSPEAIPRREPGSKPEALSNGKWSGPSPSYDPQELNFGMLSPKSPDFDDMEEDNQTDIMDLDRSNRRRQKPKRYSEKEFVEALSDNEADYDSDDDIVGEAVYSEEYLQKRKQRRKASSSSGSEGDEEYNWNEDNIEDEEEDDEEDSMSVSEESDKPRKFKRLAGRTRRETKLRSVGEIQSGLRRSKRATQKRINYRQLEMSDSETEFVKPDKSNANASDDHSDPSENGDYMMESEDSDGNDDEEQETKDVEPVTYPAEGNNQYPAVEENEQSKIQPPEKSSSPGQEEVEGTTKRRFLDLNELAPSSGFDDAPNTTSKDEGNEDL 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1300g00010 736 PANTHER REMODELING AND SPACING FACTOR 1 43 730 IPR028938 GO:0006355|GO:0031213
Vium1300g00010 736 MobiDBLite consensus disorder prediction 1 101 - -
Vium1300g00010 736 MobiDBLite consensus disorder prediction 676 699 - -
Vium1300g00010 736 MobiDBLite consensus disorder prediction 609 640 - -
Vium1300g00010 736 MobiDBLite consensus disorder prediction 405 423 - -
Vium1300g00010 736 MobiDBLite consensus disorder prediction 516 533 - -
Vium1300g00010 736 MobiDBLite consensus disorder prediction 497 512 - -
Vium1300g00010 736 MobiDBLite consensus disorder prediction 405 736 - -
Vium1300g00010 736 MobiDBLite consensus disorder prediction 538 561 - -
Vium1300g00010 736 Pfam DDT domain 119 164 IPR018501 -
Vium1300g00010 736 MobiDBLite consensus disorder prediction 469 496 - -
Vium1300g00010 736 MobiDBLite consensus disorder prediction 641 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1300g00010 Vium-Chr1300 174645 183266 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vium1300g00010 DDT 1.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1300g00010 - - gmx:100816258 1138.64