Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1300g00008 ATGGAGTTTGCGAACTTCAAACTCTACCTTAACTCGAAGTGGGTATCGACGGTGGCGAGCATATGGATTCAGTGCACCAGCGGCTCACTCTATACTTTCTCCATCTACTCCCAAACTCTCAAGTCCACTCAGCTCTACGATCAGTCAACGCTCGACCTTGTCTCCGTCTTCAAGGACATCGGAGTCAACGCCGGCGTCCTCTCCGGCGTCCTCTACGACTTCCTTGCCCGCACAACCACAGCTGGGCCCTGGATCGTCCACTTCTTGGGCTCGGCCCAGTGCTTCTTGGGCTATTTCCTTATGTGGGCCGCCGTAGCCGGCCTCTTTCCGCCTGTACCCGTCCCCGTCATGTGCTTCTTCATGTTGGTTACAGCCCACGGGCATAGTTTCTTCAACACCTCCAACGTTGTCACCGGCGTTCATAATTTCCCTCACAACAGCGGCACCATTGTCGGCATTTTGAAGGGATTTCTTGGTCTAAGTGGAGCAATATTAATTCAAGTGTACAAAACATTATTCAACAACAAGCCTATGTCGTATCTTCTGATGCTAGCACTCTTACCACCTATAAATGCTTTGCTGCTTATGTGGTTTGTGAGAATCCACAACACTCGTCAGGATGAAGAAAGGAAGTATTTGAATATATTTTCTGTGATGGCTATGGTTGTTGCTGCATACCTTATGTTTGTTATAATTCTAGACAACATCTTTAGCCTGCAATCATCGGTGCGCATCTTTATACTTGTTGTTCTTGTGTTGTTGCTTGCCTCACTTCTCTTCATTGCATTTAAAGCACACGAAAAGTGCTCTGGCGAAAGAAGTTTAGAAGATTTTCTGGATGAAAGGGCACAACTAATTGTGGAGCCTGAAAAGGTGGATGCAAGGTCAGATTCTTTGAACAATCGAATGACTAGTTTGCAACTAGGAGAAAACCTGAATCTTTTCCAAGCAGTGAAAACTGTGAACTTTTGGATTTTTTTTGTTTCTGTTGCTTGTGGTATGGGATCAGGAGTTGCAACTGTTAATAATTTGGGGCAAATAGGGGAATCTCTTGGTTACACAAGCCATGAGACAGGTTCCTTGGTTTCTTTGTGGAGCATTTGGAATTTTCTAGGTCGATTTGGAGGAGGTTATGTGTCAGATTATTATTTGCACACAAGAGGATGGGCAAGACCTTTATTCATGGTGATCACTTTAATGGTGATGAGCATTGGTCATGTGGTGATTGTTTCTGGACTTCCAGGTGCCCTATATGCTGGTTCAGTATTGGTGGGTATTTGTTATGGCTCTCAGTGGTCACTCATGACCACTCTCACTTCTGAGATATTTGGTGTTGCAAATATGGGCAGCATATTCAACACCATTAGTATAGCAAGTCCTGTGGGTTCTTATGTATTCTCTGTCAGAGTAATTGGATATGTATATGACAGAGAAGCATCGGAAGGAAACACATGCATTGGAACTTCTTGTTTTATGTTTTCATTTCTCATAATGGCATCTGCCACTATTCTGGGTTCTCTAACAGCATTACTTTTGTTTTTTCGGACCAAAGATTTCTATGCTCAGGTTATACTCAGAAGAATTCAAAATATTCAAAATACTGTGAGGGAATAA 1614 0.4343 MEFANFKLYLNSKWVSTVASIWIQCTSGSLYTFSIYSQTLKSTQLYDQSTLDLVSVFKDIGVNAGVLSGVLYDFLARTTTAGPWIVHFLGSAQCFLGYFLMWAAVAGLFPPVPVPVMCFFMLVTAHGHSFFNTSNVVTGVHNFPHNSGTIVGILKGFLGLSGAILIQVYKTLFNNKPMSYLLMLALLPPINALLLMWFVRIHNTRQDEERKYLNIFSVMAMVVAAYLMFVIILDNIFSLQSSVRIFILVVLVLLLASLLFIAFKAHEKCSGERSLEDFLDERAQLIVEPEKVDARSDSLNNRMTSLQLGENLNLFQAVKTVNFWIFFVSVACGMGSGVATVNNLGQIGESLGYTSHETGSLVSLWSIWNFLGRFGGGYVSDYYLHTRGWARPLFMVITLMVMSIGHVVIVSGLPGALYAGSVLVGICYGSQWSLMTTLTSEIFGVANMGSIFNTISIASPVGSYVFSVRVIGYVYDREASEGNTCIGTSCFMFSFLIMASATILGSLTALLLFFRTKDFYAQVILRRIQNIQNTVRE 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1300g00008 537 Pfam Nodulin-like 13 262 IPR010658 -
Vium1300g00008 537 SUPERFAMILY MFS general substrate transporter 10 209 IPR036259 -
Vium1300g00008 537 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 14 521 - -
Vium1300g00008 537 CDD MFS_Mch1p_like 12 505 - -
Vium1300g00008 537 Gene3D MFS general substrate transporter like domains 183 505 IPR036259 -
Vium1300g00008 537 SUPERFAMILY MFS general substrate transporter 215 518 IPR036259 -
Vium1300g00008 537 Pfam Major Facilitator Superfamily 325 516 IPR011701 GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1300g00008 Vium-Chr1300 151924 155189 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1300g00008 10 530 Nodulin-like Gene Family AT1G74780 54.221 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1300g00008 - - gmx:100814668 863.218