Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1300g00007 ATGGGGTGGGTGGCGAATCCGTGGACGGCCGTCGCCGCCGCCATCTGGATCCAGTCGAGCTGCGGCGCATCGTACACCTTCAGCATTTACTCCGCCGTGCTGAAGTCAACGCAGGGCTACGACCAATCCACCCTCGACACCGTCTCCGTCTTCAAGGACATCGGCGCTAACTTCGGCGTCCTATCTGGCCTCCTCTACACCGCCGTCGTTCCCTACACCCGTCGCTCCGCCCTTCCCGGCTCCCCGTCCAAGTCCAAATGGACCTCTCTCGCTGGGCCCTGGGTCGTTCTCGCTGCCGGAGCGATCCAGTTCTTCGTGGGCTACCTTTTCATATGGGCCTCCGTCGTGGGCCTTATAAGCCCGCCTCCCGTGCCCGTCATGAGCTTCTTCGCGTGGCTCGCGGCTAACGGTCAAACCTTCCTGAACACCACCAATGTCGTCACTGGCTTGCGCAATTTCCCTGGGTATAGCGGCACGATCATTGGGATCATGAAGGGCTTTCTCGGACTAAGTGGAGCTATCTTGATCCAAATTTACCATACTTTTTTCGATGGGGAGCCGTCAACGTTCATTTTGATGCTTGCTTTGTTACCTTCATTGATCTGCGTGTTGTTTATGTTCTTGTTGAGAATTTATGAAGTTCATGGCAGTGATTACAAGAAGCATTTGGATAGTTTCTCTGTGGTTACTGTGATTATTGTTTCCTATCTCGTGTTCATTATAATCTTACAGAACATCGTTCGTTTGCCATATTGGGGATGGATGTTAGAGTTTGTGATTCTCATGGTTCTGCTAGCATCGCCTTTTGGAATTGCTATCAATGCCCACTGGGATGAGTCGCAGAAGTTTACACAGTCCTACACCATTGAGAGGGGTTCTTCTACAAATAAGGGTACTACATCTTCCAGTTATTCTGCATCAGGGGATCAAGTGGAGTACCATGAGTTGCCCAGTGATGAGGGGCAGGCACATGTGACTTCAGATGAGGAATTGCCACATGAAGAAGATAAGAGCCCATTGCAAGCTATATGCACGCTTGAGTTTTGGATGTTGTTTGTGATCATGATATCTGGATTAGGATCTGGGCTTGCAACTATCAATAATATGAACCAAATAGGACAATCCCTTGGCTATAGTACCATAGAGATTACTAATATGGTATCACTATGGAGTATGTGGAACTTTCTTGGTCGTTTTGGAGGTGGCCATATATCTGATTATATCATGCAGAGAAAAGGTTGGCCAAGGCCCCTATTGATGACAGCAACACTGGGGATGATGGTTATTGGCCATTTAATTATAGCATGTGGTTTCCGTGGAAATTTGTATTTGGGTCCTGTTCTAGTGGGCATTGGCTATGGTGCACATTGGTCCTTGATGCCTACAATCACTTCGGAGATATTTGGTGTGAAGCATATGGGTACCATTTTCAATGCCATTGCTGCAGCAAGTCCACTTGGATCTTACATACTTTCTGTGAAAGTTGTTGGGTATATTTATGACAAGCAAGCCGATGAAGATAATTTTTGTTTTGGCACAGGCTGTTTCATGCCTTCATATTTTATCCTGGCAGGCGTGACTTTTCTTACACTTTTGGTTGCTTTGGTATTATACTTCCGGACCGAAAGGTTTTATAAACAAGTTGTGCTTAGAAGATTGAAACATTATGCAAGATGA 1677 0.4693 MGWVANPWTAVAAAIWIQSSCGASYTFSIYSAVLKSTQGYDQSTLDTVSVFKDIGANFGVLSGLLYTAVVPYTRRSALPGSPSKSKWTSLAGPWVVLAAGAIQFFVGYLFIWASVVGLISPPPVPVMSFFAWLAANGQTFLNTTNVVTGLRNFPGYSGTIIGIMKGFLGLSGAILIQIYHTFFDGEPSTFILMLALLPSLICVLFMFLLRIYEVHGSDYKKHLDSFSVVTVIIVSYLVFIIILQNIVRLPYWGWMLEFVILMVLLASPFGIAINAHWDESQKFTQSYTIERGSSTNKGTTSSSYSASGDQVEYHELPSDEGQAHVTSDEELPHEEDKSPLQAICTLEFWMLFVIMISGLGSGLATINNMNQIGQSLGYSTIEITNMVSLWSMWNFLGRFGGGHISDYIMQRKGWPRPLLMTATLGMMVIGHLIIACGFRGNLYLGPVLVGIGYGAHWSLMPTITSEIFGVKHMGTIFNAIAAASPLGSYILSVKVVGYIYDKQADEDNFCFGTGCFMPSYFILAGVTFLTLLVALVLYFRTERFYKQVVLRRLKHYAR 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1300g00007 558 Gene3D MFS general substrate transporter like domains 327 555 IPR036259 -
Vium1300g00007 558 SUPERFAMILY MFS general substrate transporter 233 543 IPR036259 -
Vium1300g00007 558 ProSiteProfiles Major facilitator superfamily (MFS) profile. 346 558 IPR020846 GO:0022857
Vium1300g00007 558 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 8 546 - -
Vium1300g00007 558 CDD MFS_Mch1p_like 7 529 - -
Vium1300g00007 558 Pfam Major Facilitator Superfamily 351 543 IPR011701 GO:0022857|GO:0055085
Vium1300g00007 558 Pfam Nodulin-like 7 68 IPR010658 -
Vium1300g00007 558 Pfam Nodulin-like 92 272 IPR010658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1300g00007 Vium-Chr1300 141404 143891 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1300g00007 1 555 Nodulin-like Gene Family AT1G74780 55.036 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1300g00007 - - gmx:100799596 950.658