Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1300g00004 ATGGGGAACTGCAACGTGTGTGCGAAAGCTGATGTGGTTGAAGATAATAGCAAGAAGTCGAGCGACGGCAACCGCGCCCGGAAAAAGGATGCGAACCAGAAAAAGCCGAACCCGTTTTCCGACGAACCGGGGCGGTCGGCGACGCCGATCCGCGTTCTGAAGGATGTGATCCCAATGAGCCACAGGACGCGCATAAGCGATAAGTACATATTGGGCCGGGAATTGGGCCGGGGCGAGTTCGGCATCACCTACCTCTGCACGGACCGGGAAACCAAGGAGGCGTTGGCCTGCAAATCGATCTCGAAGAGGAAGCTGCGGACTGCCGTGGACATCGAGGACGTGCGGCGCGAGGTGGCTATCATGTCCACGCTTCCGGAGCATCCCAACGTCGTGAAGCTCAAGGCTACCTACGAGGACAACGAGAACGTGCACCTCGTGATGGAGCTCTGCGAGGGAGGAGAACTTTTCGACAGAATTGTCGCCCGCGGACACTACAGCGAGCGTGCGGCCGCCGCCGTGGCGCGCACCATCGCTGAAGTTGTGAGGATGTGCCATAGCAATGGCGTCATGCACAGAGACCTCAAGCCAGAGAACTTCCTCTTCGCGAATAAGAAGGAAAATTCCGCTCTCAAAGCCATCGATTTTGGCCTCTCCGTGTTCTTCAAACCAGGGGAGAAGTTTGCGGAGATTGTTGGGAGTCCTTACTACATGGCGCCGGAGGTTCTGAAGCGGAATTACGGGCCGGAGGTGGATGTGTGGAGTGCTGGGGTGATTCTTTACATTTTGTTGTGTGGGGTTCCCCCGTTTTGGGCAGAGACTGAGCAAGGTGTGGCGTTGGCGATCTTGAGGGGTGTCATTGACTTCAAGAGGGAACCTTGGCCGCAGATATCGGAGAGTGCCAAGAGCCTTGTGCGCCTAATGTTGGAGCCTGATCCTAAAAAGCGTTTGACAGCTGAACAGGTTCTTGAACATCCCTGGCTGCAAAACGCAAAGAAAGCTCCAAATGTTCCATTGGGAGATATTGTGAGGTCAAGGCTTAAGCAGTTTTCTGTGATGAATAGATTCAAAAAGAGAGCTCTGCGGGTAATTGCAGAGCATTTATCTGTTGAAGAAGTAGAAATAATCAAAGATATGTTTACATTGATGGATACTGACAAAGATGGCAGAGTAACATACGAGGAGCTGAAGGCTGGATTGAGGAAAGTTGGTTCACAATTGGCTGAGCCAGAGATAAAGATGCTGATGGAAGTGGCCGATGTTGATGGGAATGGAGTACTTGACTATGGAGAGTTTGTAGCTGTTACAATTCACTTGCAAAAAATGGAGAACGATGAGCATTTCCACAAAGCATTCAAGTTTTTTGACAAAGATGGGAGTGGTTATATTGAGTCTGGCGAGTTACAAGAAGCATTAGCAGATGAGTCAGGAGAAACTGATGCTGATGTATTACACGATATCATGCGTGAAGTAGACACTGACAAGGATGGTCGCATTAGTTACGAGGAGTTCGTGGCAATGATGAAGACTGGAACTGACTGGAGAAAAGCGTCCAGGCAATATTCAAGAGAGAGATTCAAGAGTTTGAGCCTAAATTTGATGAAGGATGGCTCGCTTCAGCTTCATGATGGAATTACTGGTCAAGCTGTGGTGGTTTAA 1656 0.5024 MGNCNVCAKADVVEDNSKKSSDGNRARKKDANQKKPNPFSDEPGRSATPIRVLKDVIPMSHRTRISDKYILGRELGRGEFGITYLCTDRETKEALACKSISKRKLRTAVDIEDVRREVAIMSTLPEHPNVVKLKATYEDNENVHLVMELCEGGELFDRIVARGHYSERAAAAVARTIAEVVRMCHSNGVMHRDLKPENFLFANKKENSALKAIDFGLSVFFKPGEKFAEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVALAILRGVIDFKREPWPQISESAKSLVRLMLEPDPKKRLTAEQVLEHPWLQNAKKAPNVPLGDIVRSRLKQFSVMNRFKKRALRVIAEHLSVEEVEIIKDMFTLMDTDKDGRVTYEELKAGLRKVGSQLAEPEIKMLMEVADVDGNGVLDYGEFVAVTIHLQKMENDEHFHKAFKFFDKDGSGYIESGELQEALADESGETDADVLHDIMREVDTDKDGRISYEEFVAMMKTGTDWRKASRQYSRERFKSLSLNLMKDGSLQLHDGITGQAVVV 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1300g00004 551 SUPERFAMILY Protein kinase-like (PK-like) 50 355 IPR011009 -
Vium1300g00004 551 ProSitePatterns EF-hand calcium-binding domain. 491 503 IPR018247 -
Vium1300g00004 551 Pfam Protein kinase domain 71 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1300g00004 551 CDD STKc_CAMK 68 326 - -
Vium1300g00004 551 ProSitePatterns EF-hand calcium-binding domain. 383 395 IPR018247 -
Vium1300g00004 551 Gene3D Phosphorylase Kinase; domain 1 70 154 - -
Vium1300g00004 551 ProSiteProfiles EF-hand calcium-binding domain profile. 406 441 IPR002048 GO:0005509
Vium1300g00004 551 MobiDBLite consensus disorder prediction 14 36 - -
Vium1300g00004 551 SMART efh_1 410 438 IPR002048 GO:0005509
Vium1300g00004 551 SMART efh_1 482 510 IPR002048 GO:0005509
Vium1300g00004 551 SMART efh_1 446 474 IPR002048 GO:0005509
Vium1300g00004 551 SMART efh_1 374 402 IPR002048 GO:0005509
Vium1300g00004 551 ProSitePatterns EF-hand calcium-binding domain. 419 431 IPR018247 -
Vium1300g00004 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Vium1300g00004 551 SMART serkin_6 69 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1300g00004 551 ProSiteProfiles EF-hand calcium-binding domain profile. 478 513 IPR002048 GO:0005509
Vium1300g00004 551 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Vium1300g00004 551 MobiDBLite consensus disorder prediction 14 47 - -
Vium1300g00004 551 SUPERFAMILY EF-hand 355 534 IPR011992 -
Vium1300g00004 551 Pfam EF-hand domain pair 445 508 IPR002048 GO:0005509
Vium1300g00004 551 Pfam EF-hand domain pair 375 434 IPR002048 GO:0005509
Vium1300g00004 551 FunFam Calcium-dependent protein kinase 1 71 154 - -
Vium1300g00004 551 ProSitePatterns EF-hand calcium-binding domain. 455 467 IPR018247 -
Vium1300g00004 551 ProSiteProfiles Protein kinase domain profile. 69 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1300g00004 551 CDD EFh 446 508 IPR002048 GO:0005509
Vium1300g00004 551 FunFam Calcium-dependent protein kinase 7 336 511 - -
Vium1300g00004 551 PANTHER SERINE/THREONINE-PROTEIN KINASE 61 503 - -
Vium1300g00004 551 Gene3D - 336 511 - -
Vium1300g00004 551 ProSiteProfiles EF-hand calcium-binding domain profile. 442 477 IPR002048 GO:0005509
Vium1300g00004 551 ProSiteProfiles EF-hand calcium-binding domain profile. 370 405 IPR002048 GO:0005509
Vium1300g00004 551 FunFam calcium-dependent protein kinase 13 155 335 - -
Vium1300g00004 551 Gene3D Transferase(Phosphotransferase) domain 1 155 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1300g00004 Vium-Chr1300 98801 103697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1300g00004 1 551 EF-hand Containing Proteins AT1G74740 81.522 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium1300g00004 Pkinase 2.1e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1300g00004 K13412 - gmx:100809838 1031.55