Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13002g00001 ATGGCTAGGAGAAAGAAAGTGACACTAAAACTGATTGAGAATTTTGTGGCAAGAAAAGCTCGTTACAGAAAAATTCGAGAAAATTTATTGAAGAAGGTGGAAGATGTTACGACCCTTTGTGATGTGAATGCATGTGCAATCATCTATGGTCCAGGGGACGACGTGCCAACCGTGTGGCCATCCCATGATATTGCTAAAGAGTTGCTCGACAAGTTTGAGAATGCTCCATTGCCAGAACGATTGAAAAAAAATGTTACTCCACAACTTTATATCGACCAGATGAACAGAAAGATTGAAAAACAAGTCATGAAACTGAAGAAGAAGAACGATGAGAAAGACATGTCAAATTTCTTGCACAATATACATGATGGTAAGTCTTTATCAGATCTTGATGCTAGCGATATATGTCGTTTACTTTGTTACGTGGAGGGAAAATTGAAGTGTGCTGGAGTAAAAGTTCACATTTCTGAACAACAGTTATCAACTAAAACTCCGACACCACTAGTTTCTTTTCCTCTGCAGAATGACATCGATTCTTGTGCTAACATAGATGAACAGGTTTTTCAACAACAATCATCCTTAGATTCAACGAAAGAAACTGGTCCAATGAATAGTGATTCCGATAATAATAAGAATACGGGACTACCACCACTACAGCAACACGCACATGATAATACGGGGTTGTCTCAAGTTAATTTTGAAAGTTTGAATTTGGATGATATTGGTATGGTGTTACATTCAGCAAATTTTAATGATGTGATTGATGATAATGGCTTGGCATTTGGGATGTTGGCTCAAGATAATTATATAGGTATTTGTGATAATGGTGATTTAGGGCTTTTACATGGGAGTTCTTCAGGTGGAGAAATTACAGGCAATGACATATGGTCATCTTATGAAAGTTTTGGAGACATAAGTGAGAGTGATACCATGTTGCCCTTCAACAATAATGTTCAAGACAACATTGATGGAACTTTCATGGGAGCAAACGTTGAAAATGAAGGTGTCTCCATTAATAATATAGAGTTAAGCGGTGATCAAAGAACTACCAGTGGAGACACTTGA 1065 0.3737 MARRKKVTLKLIENFVARKARYRKIRENLLKKVEDVTTLCDVNACAIIYGPGDDVPTVWPSHDIAKELLDKFENAPLPERLKKNVTPQLYIDQMNRKIEKQVMKLKKKNDEKDMSNFLHNIHDGKSLSDLDASDICRLLCYVEGKLKCAGVKVHISEQQLSTKTPTPLVSFPLQNDIDSCANIDEQVFQQQSSLDSTKETGPMNSDSDNNKNTGLPPLQQHAHDNTGLSQVNFESLNLDDIGMVLHSANFNDVIDDNGLAFGMLAQDNYIGICDNGDLGLLHGSSSGGEITGNDIWSSYESFGDISESDTMLPFNNNVQDNIDGTFMGANVENEGVSINNIELSGDQRTTSGDT 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13002g00001 354 PRINTS MADS domain signature 4 24 IPR002100 GO:0003677|GO:0046983
Vium13002g00001 354 PRINTS MADS domain signature 24 39 IPR002100 GO:0003677|GO:0046983
Vium13002g00001 354 PRINTS MADS domain signature 39 60 IPR002100 GO:0003677|GO:0046983
Vium13002g00001 354 Coils Coil 91 111 - -
Vium13002g00001 354 CDD MADS_SRF_like 4 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vium13002g00001 354 Gene3D - 16 123 IPR036879 GO:0003677|GO:0046983
Vium13002g00001 354 ProSiteProfiles MADS-box domain profile. 2 50 IPR002100 GO:0003677|GO:0046983
Vium13002g00001 354 SMART madsneu2 2 61 IPR002100 GO:0003677|GO:0046983
Vium13002g00001 354 MobiDBLite consensus disorder prediction 191 223 - -
Vium13002g00001 354 SUPERFAMILY SRF-like 4 88 IPR036879 GO:0003677|GO:0046983
Vium13002g00001 354 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13002g00001 Vium-Chr13002 3991 5055 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13002g00001 4 170 Type I MADS-box Gene Family AT1G65300 29.412 2.53e-22 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vium13002g00001 SRF-TF 7.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13002g00001 - - var:108328520 696.041