Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium129g00002 ATGGGGAAAGGAAGAGCACCATGTTGTGATAAGACTAAAGTGAAGAGAGGTCCTTGGAACCCTGCAGAAGATCTTAAACTCATAGCCTTCATCCAGAAATATGGCCATGAAAACTGGCGAGCTCTCCCAAAACAAGCTGGGCTTCTGAGATGTGGAAAAAGTTGTCGTTTGAGATGGATTAATTATCTAAGACCTGATGTGAAGAGAGGAAATTTTACACCAGAGGAAGAGGAAACCATCATAAGACTTCACAGGGCCATGGGAAACAAGTGGTCAAAGATTGCATCACGTTTGCCTGGTAGGACAGACAATGAGATCAAGAATGTCTGGAACACCCACTTAAAGAAAAGGTTGTCTCCTAAAAAAACTTCAGAATCAAGTACAGATGAATCCAAGCCAGAATCAACAATAACTTCCACCTCTTCCTCTTCCTCTCAGTCCTTTTTCTCAACTGAGAGGCCAAATTCACCCAAGAGCACTACACCTTATACTAATGAATTTTGTGACCAAGCAGAGCAATTATCAATGGAAGATAAAATTGAGCAGGATTCAGAAAAAGCAGTGTCAAGTGAACTACTAATTGGCATGACTGAGGATCCAAAAGAGTCATCGGCTTCATTTTCTTGTGAGTCAAATATTGTAAACTCGAGCCAGAATGTTGCACAGAAACCTGAAGAGACATTGGCTTCGCCCTTATCTGTATCAATATATACTATTGAGACAATTAATATTGTAAATTCAGGCCAGAAAGTTGCACACAAACCAGAACAACAATTGGCTTCTCCATCATCCTACCTAGGACCTTATGATGTCGGCCATATTTTAGAAATTCCATGGGAACCAGATTATGAGTTTTGGAAGTTGTTAGATGATGATAGCCCTGGATCTTTTCAATCAAAGGAAGTCCAATTAGGTGAGTTCTCAGCCAACCAAAACATGATTCTTGGAGAAGAG 954 0.4046 MGKGRAPCCDKTKVKRGPWNPAEDLKLIAFIQKYGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTPEEEETIIRLHRAMGNKWSKIASRLPGRTDNEIKNVWNTHLKKRLSPKKTSESSTDESKPESTITSTSSSSSQSFFSTERPNSPKSTTPYTNEFCDQAEQLSMEDKIEQDSEKAVSSELLIGMTEDPKESSASFSCESNIVNSSQNVAQKPEETLASPLSVSIYTIETINIVNSGQKVAHKPEQQLASPSSYLGPYDVGHILEIPWEPDYEFWKLLDDDSPGSFQSKEVQLGEFSANQNMILGEE 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium129g00002 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Vium129g00002 318 SMART sant 15 65 IPR001005 -
Vium129g00002 318 SMART sant 68 116 IPR001005 -
Vium129g00002 318 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Vium129g00002 318 FunFam MYB transcription factor 70 145 - -
Vium129g00002 318 FunFam Transcription factor RAX3 9 69 - -
Vium129g00002 318 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Vium129g00002 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Vium129g00002 318 Gene3D - 16 68 - -
Vium129g00002 318 MobiDBLite consensus disorder prediction 130 164 - -
Vium129g00002 318 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Vium129g00002 318 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Vium129g00002 318 CDD SANT 71 114 IPR001005 -
Vium129g00002 318 MobiDBLite consensus disorder prediction 114 129 - -
Vium129g00002 318 CDD SANT 18 63 IPR001005 -
Vium129g00002 318 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Vium129g00002 318 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 210 - -
Vium129g00002 318 MobiDBLite consensus disorder prediction 114 164 - -
Vium129g00002 318 Gene3D - 70 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium129g00002 Vium-Chr129 36504 38933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium129g00002 1 120 MYB Transcription Factor Family AT1G56160 82.500 6.39e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium129g00002 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium129g00002 K09422 - gmx:100101836 450.284