Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12993g00001 ATGGGTCGTCGTAAGATTGATATCGCAGAGGTGAAGGATCCCAACAGCAAGCAAGTTACATTCTCCAAGCGCCGCTCAGGTTTGTTCAAAAAGGCATGCGAATTGTCTGTAATGTGCGGTGTAGAACTTGCTATTGTTATGTTCTCTCCTGGGAAAAAGCCTCACTCTTTTGGCCACCCAAGTGTTAATGCTGTTGCAGACAAATTTCTTCGGAAGAAGCGAACGTCAAATGTTGTCGGAGCAAATTATGTACGAGAAAATGACGCACCTAATGAAGTTGATGGCATGGAGAGGTTAAGCCAGCAGTTATTTTCCGTTGAAGTTCACATAAACGAGGAACACAAGAAGGCAACGGAACTTGACAAGAGAGAGAAAGAACAAGAAGCTTCACAAGCCCAAAACAAAGAATTGCAAAATTCACCAGTGCTCCAGCGTATGGTGGAAGATTATGTTGATGCGATCGAGGTCTCAGAG 474 0.4409 MGRRKIDIAEVKDPNSKQVTFSKRRSGLFKKACELSVMCGVELAIVMFSPGKKPHSFGHPSVNAVADKFLRKKRTSNVVGANYVRENDAPNEVDGMERLSQQLFSVEVHINEEHKKATELDKREKEQEASQAQNKELQNSPVLQRMVEDYVDAIEVSE 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12993g00001 158 MobiDBLite consensus disorder prediction 116 131 - -
Vium12993g00001 158 Coils Coil 115 140 - -
Vium12993g00001 158 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium12993g00001 158 MobiDBLite consensus disorder prediction 116 142 - -
Vium12993g00001 158 Gene3D - 14 82 IPR036879 GO:0003677|GO:0046983
Vium12993g00001 158 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Vium12993g00001 158 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Vium12993g00001 158 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium12993g00001 158 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium12993g00001 158 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium12993g00001 158 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Vium12993g00001 158 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium12993g00001 158 PANTHER MADS BOX PROTEIN 3 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12993g00001 Vium-Chr12993 6752 7338 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12993g00001 1 71 Type I MADS-box Gene Family AT2G34440 60.563 1.04e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vium12993g00001 SRF-TF 7.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12993g00001 - - vum:124821761 313.153