Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1298g00020 ATGGAAGGGCAAGTGGCTAAACGCAGACGTGTATACTCTGTGGAGCCAAACCAAATAGTGCAATCTATATTCACTAGGAATTATTTGAACCATTTAGTTCCAGCGTTGGTGAATATAAAGGAGAAGACCTCCGTAGAAGATAGCAGCCGTTGTGATATTAACAGTGCTGTCAAGTATGAGGTGGACATGGCAATGGTGTTATCAGCACAAGGTTTTGCATGGAGTAACGGCCTCAAAGTCAAGCTTCGAAACGATCGTGGTCGAGTCAATGCAGCTAAAAGCTCTACGTTTCTTGAAAATGCGGTTGGTGAAGGTTCATCAAGTGCTTGTGAGAAAAATGAGGTTGTGCCAATGGAATTCTCTTCAAACCCTAGCTCGAAGCCTAAGGCTGAGGCTTTGGGGAGCAAGTCTAAGTGCAAGGAGGTGTCAGAAATGAAAAGGGATTTGGCGAGAGAAGATGATAATGCAGATGAGGACATCGACGAGCAGTGGAAGAGGCTGAGAAGGTTGATACCTGGAGGAGAAGAGATGTGTGATGAACAAATGACTAAAGAGCTTGAGAGTTACATTAGCTGTTTGCAAATGCAGGTGAACGCTCTTCAGTTTCTGCTGCCACAGACCCGTTAA 627 0.4482 MEGQVAKRRRVYSVEPNQIVQSIFTRNYLNHLVPALVNIKEKTSVEDSSRCDINSAVKYEVDMAMVLSAQGFAWSNGLKVKLRNDRGRVNAAKSSTFLENAVGEGSSSACEKNEVVPMEFSSNPSSKPKAEALGSKSKCKEVSEMKRDLAREDDNADEDIDEQWKRLRRLIPGGEEMCDEQMTKELESYISCLQMQVNALQFLLPQTR 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1298g00020 208 CDD bHLH_AtIBH1_like 151 204 IPR044549 GO:0006355
Vium1298g00020 208 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 22 203 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1298g00020 Vium-Chr1298 135402 136793 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1298g00020 1 82 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30180 49.398 6.93e-16 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1298g00020 - - gmx:100775329 289.271