Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1298g00016 ATGGAAACTCCTAACTTTTTCTTCTTCTCCTTGCTGCTTCTCTTGACTAGTACAACTATAAGCTCAGCTGAACTCACTCGTGGCTTCTACAACAATGTATGCCCCAATGTGGAGCAGTTGGTACGCTCTGCTGTTGCACTCAAGTTCCAGCAGACTTTTGTCACTGCTCCTGCCACTCTTCGACTCTACTTCCATGATTGCTTTGTGAGGGGTTGTGATGCTTCAATTCTGCTCGCAAATAGTAACTCAGAAAAGGATCATCCTGATGACATATCTCTTGCTGGGGATGGCTTTGACACAGTGATTAAAGCCAAGGAAGCTGTTGATAGTGACCCCAAGTGCCGGAACAAAGTCTCTTGTGCTGATATACTCGCTCTGGCTACTAGGGATGTTGTAAATTTGGCTGGGGGACCATTTTACGATGTTGAATTGGGAAGGCGTGATGGTAGAATATCTACTATTGCAAGTGTTCAACGCCATCTTCCTCACCCTGATTTCAATTTGGATCAGCTCAATTCCATGTTCAACTTCAATGGCCTATCTCAGACAGATATGATTGCATTATCAGGTGCACACACAATTGGGTTCTCTCACTGCAACCGCTTCTCGAAACGAATCTACAAATTCAGCCCCAAAAACAGAATCGATCCAACGCTGGATTTACAATATGCTTTTCAGCTTAGACAGATGTGCCCTTTAAAGGTTGATCCTAGAATTGCCATAAACATGGACCCTGTGACGCCTCAGAAGTTTGACAACCAATACTTCAAGAATCTGCAGAATGGACAGGGTCTCTTCACCTCTGATCAGGTGCTGTTTACAGATGAAAGGTCAAAGGCCACAGTCAACTCGTTTGCATCAGATGAAAGAACTTTTCAGAAAGCTTTTATTGATGCAATTACCAAGTTGGGAAGGGTTGGTGTTAAAACGGGAAAGCAAGGTGAAATTAGGTTTGATTGCACCAGGCCAAACTAG 975 0.4379 METPNFFFFSLLLLLTSTTISSAELTRGFYNNVCPNVEQLVRSAVALKFQQTFVTAPATLRLYFHDCFVRGCDASILLANSNSEKDHPDDISLAGDGFDTVIKAKEAVDSDPKCRNKVSCADILALATRDVVNLAGGPFYDVELGRRDGRISTIASVQRHLPHPDFNLDQLNSMFNFNGLSQTDMIALSGAHTIGFSHCNRFSKRIYKFSPKNRIDPTLDLQYAFQLRQMCPLKVDPRIAINMDPVTPQKFDNQYFKNLQNGQGLFTSDQVLFTDERSKATVNSFASDERTFQKAFIDAITKLGRVGVKTGKQGEIRFDCTRPN 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1298g00016 324 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1298g00016 324 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1298g00016 324 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1298g00016 324 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1298g00016 324 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1298g00016 324 Gene3D Peroxidase, domain 2 162 303 - -
Vium1298g00016 324 FunFam Peroxidase 28 171 - -
Vium1298g00016 324 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Vium1298g00016 324 FunFam Peroxidase 162 303 - -
Vium1298g00016 324 ProSitePatterns Peroxidases proximal heme-ligand signature. 184 194 IPR019793 -
Vium1298g00016 324 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1298g00016 324 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1298g00016 324 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1298g00016 324 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1298g00016 324 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1298g00016 324 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1298g00016 324 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1298g00016 324 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1298g00016 324 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1298g00016 324 CDD secretory_peroxidase 24 322 IPR033905 GO:0004601|GO:0042744
Vium1298g00016 324 ProSiteProfiles Plant heme peroxidase family profile. 24 324 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1298g00016 324 SUPERFAMILY Heme-dependent peroxidases 25 324 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium1298g00016 324 Gene3D - 28 324 - -
Vium1298g00016 324 Pfam Peroxidase 44 288 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1298g00016 324 PANTHER - 7 324 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1298g00016 Vium-Chr1298 109879 111523 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1298g00016 5 324 Peroxidase AT2G18980 74.375 1.09e-174 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1298g00016 K00430 - gmx:100804620 574.318