Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1298g00011 ATGTCCGTAACCGTGAAAGCATGCTGCACTGTGAGGCCAATAGAGGCAACATGGTGCGGACGCGTAGCTTTATCTGAATGGGATCAAACAGGCAAAGTAACCCACGTGCCCTTTATCTACTTCTACCGTCTTCCACAAAACTGCCTCTCTCAATACAACACCATTGCTTCCACCTTGAAGGACTCATTAAGCCGAGTCCTGGTGCCGTTTTATCCACTTGCCGGTCGTTTGCATTGGACAAACAATGGACGTTTAGAAATTGATTGCAATGCCACCGGCGCTCGATTCATTGAAGCCGAATCATCATCAACCTTACAACATTTAGCTGATTTTTCATCTTGTTCGGAACACCACTACCTTGTCCCTGCTGTGGACTACTACTCCCTACCAATTCACGAGTTGCCGTTGGTTCTGGTTCAGCTGACGAAGTTCAAGTGCGGTGGCATTTGTATTGGCGTAACACTTTCGCACGCAGTTGTGGATGGACCAAGTGCACTGCACTTCGTATGTGAGTGGGCAAGGCTTTCACGGGGCGAGCCTCTGCGTACGGTGCCATTCCTTGACCGGAAAATTTTGCGTGCTGGGGAGCCTCCTTTGGTGCCACTAACAAAATGTCACGTTCACACGGAGTTCAATGATCCGCCCTTCTTGCTGGGCCGAACTGATAACAGGGAGGAAAGGGAGAAGGAAACCACGATGGATTTCGTTAAAATAAGCAAAACTCAAATTGAAAGATTGCAAAAGAGAGCAAACGAGAGTTCGCCAAGGCCTAGAAATGATCGTGGTTATTCCCGTTATGAGAGCGTGACTGGTCACATATGGAGATGTGCAAGCAAGGCAAGGGAGCACAAAGAGAACCAACCTACCGTTCTTACTGTTATAGTTGACTCAAGGGGTCGCATGAAACCTCCTTTGCCAGAAGGGTACTTCGGGAATGCCAATTTGGATAGTGTTGCATGTAGTCTTGCGGGTGATTTGGTGTCGGAGCCTTTGGGGTATACGGCGAGTAGAATAAGGGAGGCGATTGAGAGGGTGAGCGATGAGTACGTGAGGTCGGGGATTGAGTTCTTGAAGAATCAGGAGAATATAAGAAGGTTTCATCAAGATCTTCACGAAGAAGGGAGAGAGAAGGAGCCTTTCTTTGGGAACCCGAATTTGTCTGTGGTGAGTTGGTTGAGGTTACCTTTCTACGGCATTGATTTTGGGTGGGGGAAGGAGGTTCGTATGAGTCCGGCAACACATGACTTCGATGGAGATTTCGTGCTTCTTCCTGATCCTGATGAGGATGGCTCTATACTCGTTTGTATAGGTCTGCAAGTGCTGCATCTTGATGCATTTAAGAAGCATTTTTACGAGGACCTTGCATAA 1368 0.4788 MSVTVKACCTVRPIEATWCGRVALSEWDQTGKVTHVPFIYFYRLPQNCLSQYNTIASTLKDSLSRVLVPFYPLAGRLHWTNNGRLEIDCNATGARFIEAESSSTLQHLADFSSCSEHHYLVPAVDYYSLPIHELPLVLVQLTKFKCGGICIGVTLSHAVVDGPSALHFVCEWARLSRGEPLRTVPFLDRKILRAGEPPLVPLTKCHVHTEFNDPPFLLGRTDNREEREKETTMDFVKISKTQIERLQKRANESSPRPRNDRGYSRYESVTGHIWRCASKAREHKENQPTVLTVIVDSRGRMKPPLPEGYFGNANLDSVACSLAGDLVSEPLGYTASRIREAIERVSDEYVRSGIEFLKNQENIRRFHQDLHEEGREKEPFFGNPNLSVVSWLRLPFYGIDFGWGKEVRMSPATHDFDGDFVLLPDPDEDGSILVCIGLQVLHLDAFKKHFYEDLA 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1298g00011 455 Gene3D - 220 453 IPR023213 -
Vium1298g00011 455 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 10 439 - -
Vium1298g00011 455 FunFam Tryptamine hydroxycinnamoyl transferase 219 451 - -
Vium1298g00011 455 Gene3D - 1 212 IPR023213 -
Vium1298g00011 455 Pfam Transferase family 1 452 - -
Vium1298g00011 455 Coils Coil 447 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1298g00011 Vium-Chr1298 75534 76901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1298g00011 1 452 Monolignol Biosynthesis Gene Families AT5G48930 35.841 1.80e-102 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1298g00011 K13065 - gmx:100777532 697.967