Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12965g00002 ATGGGTATTGATACCAATTTGGTGACTACTATCATTGGGTTTGGGTTGAGTGCAACGTTCATTGTCTTCGTTTGCACAAGAATAATTTGTGGAAGACTACACGAACGAGTTGGAGTACGAACAGTATATGAAATCGAACCAAGAACAGACATAGAACGGTCAGAGTTTCATGGTAATGAGCCTGAACCTGCTTTTGTTGCTGCAATCCCCACTTTGAGTTTCAACCATGAAGCCTTCGTTTCAACGGGAAGCACACAGTGTGTGATATTTTTGGCAGAGTACAAAGAAAAAGAAGTATTGCGCATCATACCAAAATGTGGCCACACTTTTCACCTTTCTTGCATTGATATGTGGCTGAGAAAACAATCAACTTGTCCAGTGTGTCGTTTGTCACTGCAAAATGCTTCTGAATCAAAACATGTGAGACATGTAACATTTACCATAAGACATTCGCTGGATGAGTCCAATGATATTTCAGAAAGGAACATAGACAGTGAGAGACAGGTTGAAGCTAATTCTAGGATATCTCTACAATCAACTTTGGGAGAGATAGGATGTTAG 561 0.4011 MGIDTNLVTTIIGFGLSATFIVFVCTRIICGRLHERVGVRTVYEIEPRTDIERSEFHGNEPEPAFVAAIPTLSFNHEAFVSTGSTQCVIFLAEYKEKEVLRIIPKCGHTFHLSCIDMWLRKQSTCPVCRLSLQNASESKHVRHVTFTIRHSLDESNDISERNIDSERQVEANSRISLQSTLGEIGC 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12965g00002 186 Pfam Ring finger domain 86 129 IPR001841 -
Vium12965g00002 186 SMART ring_2 87 128 IPR001841 -
Vium12965g00002 186 SUPERFAMILY RING/U-box 86 135 - -
Vium12965g00002 186 PANTHER OS11G0150450 PROTEIN 2 162 - -
Vium12965g00002 186 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Vium12965g00002 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 139 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12965g00002 Vium-Chr12965 27625 28950 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12965g00002 77 186 C3H Transcription Factor Family AT4G10150 34.328 2.48e-17 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12965g00002 - - gmx:100800505 290.041