Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12961g00001 ATGGCTGCCACTGCCAATCCTGTGGTAGGTTCCCATGTTTGGGTGGAAGATTCTCAAGAAGCCTGGATAGATGGTGAGGTCTTGGAGGTTAAGGGAGGAGAAATCAAAGTCCTTTGCACTTCAGGGAAGACGGTTGTTGTTAAACCTTCTAGTGTTTACCACAAAGATACTGAAGCCCCACCATGTGGAGTGGATGATATGACAAAACTTGCTTATCTACATGAACCTGGTGTCCTGGATAATCTGAGATCAAGATATGATATCAATGAAATTTATACTTACACCGGGAATATATTGATTGCTGTGAATCCTTTCATAAGGCTTCCTCATTTATATGATAGCCATATGATGGCACAATATAAGGGAGCAGGTTTTGGTGAGCTAAGTCCACATCCTTTTGCTGTTGCAGATGCAGCTTATAGACTTATGATTAATGAGGGAATCAGTCAGTCAATATTGGTTAGTGGTGAAAGTGGGGCTGGGAAAACAGAAAGCACCAAGTTACTCATGCGCTATCTTGCTTACATGGGAGGGAGGACCAATAATGCTGCCGAAGGTAGAACAGTTGAGCAGAAAGTTCTGGAGTCCAATCCTGTTCTAGAAGCCTTTGGCAATGCAAAGACTGTTAGAAACAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAATTTGATAAGAGTGGAAGAATATCTGGGGCTGCTATCAGAACTTATCTGCTGGAAAGATCACGTGTTTGCCAGGTGTCAGATCCAGAGAGGAACTATCACTGTTTCTATATGCTCTGTGCTGCACCTCCAGAGGATATTCAGAAGTTCAAATTAGGAAATCCTAGAGAATTTCATTATCTGAATCAAACAAATTGCTTTGAGTTGGAAGGGGTTGATGAGTCAAAAGAATATCGTGATACTAGGAGGGCAATGGACGTTGTTGGAATAAGTTCTGAGGAGCAGGATGCAATATTTCGAGTGGTTGCTGCAATTTTGCATCTTGGCAACATTGAATTTGCAAAAGGGACAGAAATGGACTCAAGTGTGCCCAAAGATGAAAAATCTTGGTTCCATCTACATACTGCTGCCGAACTTTTCATGTGTGATGCAAAGGCACTTGAAGATTCTCTTTGCAAGCGTGTAATTGTTACTCGTGATGAAACTATAACAAAATGGCTAGATCCAGAATCTGCTGCACTCAGCCGTGATGCTTTGGCTAAGATTGTGTACACGAGGTTGTTTGATTGGCTGGTAGATAAAATTAATAATTCTATTGGACAAGACCCTGATTCGACATCCTTAATTGGCGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGACTAACAGTTTTGAGCAATTTTGCATCAATTTGACCAATGAAAAACTTCAGCAACATTTTAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAAAAAAGAGGAGATTGATTGGAGTTACATTGAGTTTGTTGATAATCAAGATATTCTAGATCTCATTGAAAAGAAGCCTGGAGGCATTATTGCTCTTCTTGATGAGGCTTGTATGTTTCCTAGATCAACACATGAAACTTTTTCCCAAAAGCTGTATCAGACATTCAAAAACCACAAAAGGTTCAGCAAGCCCAAATTGTCACGTAGTGACTTCACAATTTGCCATTATGCGGGTGATGTCACTTATCAAACTGAATTGTTCCTGGACAAGAACAAAGATTACGTTGTTGCAGAACACCAGGCACTTCTTTATGCGTCAAAATGCCCCTTTGTGTCTGGGTTATTCCCCCCTTCACCTGAGGAATCGTCCAAACAATCGAAGTTTTCTTCAATAGGTTCCCGTTTTAAGCAACAATTGCAAGCCCTACTTGAAACTCTCAGTGCCACCGAGCCGCACTACATTCGTTGTGTTAAACCCAATAATCTTCTTAAGCCAGCAATATTTGAAAATAAAAATGTTTTGCAGCAATTGCGATGTGGGGGAGTTATGGAGGCAATTAGGATAAGTTGTGCTGGTTATCCGACTAGGAAAACATTTGATGAGTTTGCAGATCGATTCGGACTTCTTGCTCCGGAAGCTATAGACAGGAGTTCTGATGAGGTCACTGCTTGCAAGAGGATTCTGGAGAAGGTTGGACTTAAGGGCTATCAGATTGGTAAAACCAAAGTGTTTCTTCGAGCTGGTCAAATGGCAGATCTAGATACTCGTAGAAGTGAGGTCTTAGGAAAGTCAGCTAGCATTATTCAGAGAAAAGTTCGCACCTTTTTGGCCAGCCGAAGTTTTATCTCAATACGCTTGTCTGCTATAAAGATTCAAGCTGCATGCAGAGGACAACTTGCTCGGCAAGTTTATGAAGGATTGCGACGGGAGGCTTCTAGTCTGATGATTCAGAGATTTTTCCGCATGCATGTTGCCAAGAAGGCGTATAAAGAATTGTATAGCTCGACTGTTTCCCTTCAGACTGGTATGCGAGGGATGGCTGCTCGTAGTGAGCTGCGCTTTAGGAAGCAAACCAGGGCTGCTATTGTCATTCAGAGCCACTGCAGGAAATACCTAGCACTCCATCGTTTTACGAACTTAAAGAAGGCAACTATTGCAACACAATGTGCATGGAGAGGAAAAGTTGCTCGACAAGAATTAAGGAAGCTCAAGATGGCTGCAAGAGAAACTGGAGCTCTACAAGCTGCCAAAAATAAGCTTGAAAAGCAAGTTGAAGATCTCACATTGAGGTTGCAGTTAGAAAAACGCTTGAGGGTTGACATTGAAGAATCAAAAACACAAGAAAATGAAAAACTACAATCTGCTTTGCAAGAGATGCAACTTCAGTTTAAAGAAACCAAGTTATTACTTCAAAAGGAACGAGAGGCTGCAAAAAGAGAAGCTGAGAGAGCACCTGTCATACAGGAGGTTCCTGTTGTTGACCATGCTCTGTTGGAGAAGCTAACTAGTGAAAATGAGAAACTCAAGACCCTGGTGAGTTCATTGGAAGAGAAAATTGGTGAAACTGAAAAAAGATACGAAGAGGCAAACAAAATTAGTGAAGAGAGGTTGAAGCAGACTTTGGATGCTGAATCAAAAATAATCCAGTTGAAGACAGCTATGCAGAGGCTCGAAGAGAAATTCTCTGACATGGAATCCGAAAACCAGGTTCTACGGCAACAAACTCTGCTAAATTCTTCGTCAAAAACAATGTCAGAACACCTTTCTACCCACATATCTGAGCAGAAATTGGAAAATGGTCACCATGTGGGTGAAGATCATAAAATTTCTGAAGCACAGAGTGTCACACCTGTGAAGAAGTTTGGTACAGAATCTGATGGGAAATTGAGGAGATCCTTCATTGAGCGTCAGCATGAGAATGTTGATGCACTTGTGAACTGCGTTACGAGAAATATTGGTTTCCATCATGGAAAGCCTGTTGCTGCATTTACCATTTATAAATGTCTCCTCCACTGGAAATCATTTGAGGCTGAACGAACAAGTGTATTTGATCGCCTTATCCAGATGATTGGCTCTGCAATTGAGAATCAAGATGACAATGATCTTATGGCCTATTGGCTGTCAAATATGTCTGCACTATTGTTTTTGCTCCAGCAAAGTCTGAAATCTGGTGGTTCTGCTGACGCAACTCCTGTAAAAAAACCGCCAAATCCAACGTCTCTCTTTGGGAGAATGACAATGGGTTTTCGCTCATCTCCTTCTTCTGCCAGCCTTCCTACCCCAGAGGTTGTACGCAAGGTAGAAGCTAAATATCCTGCTTTGCTTTTCAAGCAACAGCTCACAGCCTATGTGGAGAAAATATATGGTATCCTTAGGGACAACTTGAAGAAAGAATTGGCATCATTGCTTTCTTTATGTATCCAGGCACCAAGAACATCTAAGGGAGTCTTACGTTCTGGCCGATCCTTTGGTAAAGATTCGCCCATGGGTCATTGGCAGAGCATTATAGAATCACTGAATACTCTCCTCTGTACTCTGAAAGAAAACTTTGTACCCCCAGTCCTTATCCAAAAGATCTTCACTCAAACATTCTCATATATTAATGTTCAACTCTTTAATAGTCTTCTTCTGCGTCGTGATTGTTGCACATTTACCAATGGGGAATATGTGAAAGCTGGTTTAGCAGAATTGGAGTTGTGGTGCTGCCAAGCAAAAGAGGAGTATGCAGGTTCATCTTGGGATGAGCTTAAGCACATTAGACAAGCCGTTGGGTTCTTGGTTATTCATCAGAAGTATAGGATTTCCTATGATGAAATCATTAATGATTTATGCCCAATCATGAGTGTCCAGCAGCTGTACAGAATATGTACACTTTATTGGGATGCTAACTACAATACTCGAAGCGTATCACCAGATGTCCTTTCAAGCATGAGAGTGCTTATGGCTGAGGACTCTAATAATGCTCAGAGTGATTCTTTCTTGTTGGATGACAGTTCCAGCATCCCCTTCTCAGTAGATGACCTCTCTACATCACTGCAAGAGAAGGATTTCTCAGACATGAAACCGGCTGATGAGCTGCTTGAGAATCCCGCCTTCCAATTTTTAAATGAGTAG 4542 0.4139 MAATANPVVGSHVWVEDSQEAWIDGEVLEVKGGEIKVLCTSGKTVVVKPSSVYHKDTEAPPCGVDDMTKLAYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFIRLPHLYDSHMMAQYKGAGFGELSPHPFAVADAAYRLMINEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRTNNAAEGRTVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDIQKFKLGNPREFHYLNQTNCFELEGVDESKEYRDTRRAMDVVGISSEEQDAIFRVVAAILHLGNIEFAKGTEMDSSVPKDEKSWFHLHTAAELFMCDAKALEDSLCKRVIVTRDETITKWLDPESAALSRDALAKIVYTRLFDWLVDKINNSIGQDPDSTSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFSQKLYQTFKNHKRFSKPKLSRSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLYASKCPFVSGLFPPSPEESSKQSKFSSIGSRFKQQLQALLETLSATEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKTFDEFADRFGLLAPEAIDRSSDEVTACKRILEKVGLKGYQIGKTKVFLRAGQMADLDTRRSEVLGKSASIIQRKVRTFLASRSFISIRLSAIKIQAACRGQLARQVYEGLRREASSLMIQRFFRMHVAKKAYKELYSSTVSLQTGMRGMAARSELRFRKQTRAAIVIQSHCRKYLALHRFTNLKKATIATQCAWRGKVARQELRKLKMAARETGALQAAKNKLEKQVEDLTLRLQLEKRLRVDIEESKTQENEKLQSALQEMQLQFKETKLLLQKEREAAKREAERAPVIQEVPVVDHALLEKLTSENEKLKTLVSSLEEKIGETEKRYEEANKISEERLKQTLDAESKIIQLKTAMQRLEEKFSDMESENQVLRQQTLLNSSSKTMSEHLSTHISEQKLENGHHVGEDHKISEAQSVTPVKKFGTESDGKLRRSFIERQHENVDALVNCVTRNIGFHHGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENQDDNDLMAYWLSNMSALLFLLQQSLKSGGSADATPVKKPPNPTSLFGRMTMGFRSSPSSASLPTPEVVRKVEAKYPALLFKQQLTAYVEKIYGILRDNLKKELASLLSLCIQAPRTSKGVLRSGRSFGKDSPMGHWQSIIESLNTLLCTLKENFVPPVLIQKIFTQTFSYINVQLFNSLLLRRDCCTFTNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEIINDLCPIMSVQQLYRICTLYWDANYNTRSVSPDVLSSMRVLMAEDSNNAQSDSFLLDDSSSIPFSVDDLSTSLQEKDFSDMKPADELLENPAFQFLNE 1513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12961g00001 1513 PRINTS Myosin heavy chain signature 431 459 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium12961g00001 1513 PRINTS Myosin heavy chain signature 198 225 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium12961g00001 1513 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium12961g00001 1513 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium12961g00001 1513 PRINTS Myosin heavy chain signature 484 512 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium12961g00001 1513 Coils Coil 879 952 - -
Vium12961g00001 1513 Gene3D Myosin VI head, motor domain, U50 subdomain 314 603 - -
Vium12961g00001 1513 ProSiteProfiles IQ motif profile. 833 862 IPR000048 GO:0005515
Vium12961g00001 1513 FunFam Myosin heavy chain 254 309 - -
Vium12961g00001 1513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 787 IPR027417 -
Vium12961g00001 1513 CDD MyosinXI_CBD 1111 1482 IPR037975 GO:0007015
Vium12961g00001 1513 ProSiteProfiles IQ motif profile. 856 885 IPR000048 GO:0005515
Vium12961g00001 1513 FunFam unconventional myosin-Va 836 883 - -
Vium12961g00001 1513 Gene3D - 669 732 - -
Vium12961g00001 1513 Coils Coil 974 1008 - -
Vium12961g00001 1513 FunFam Class V myosin 441 583 - -
Vium12961g00001 1513 ProSiteProfiles IQ motif profile. 760 789 IPR000048 GO:0005515
Vium12961g00001 1513 SMART iq_5 759 781 IPR000048 GO:0005515
Vium12961g00001 1513 SMART iq_5 736 758 IPR000048 GO:0005515
Vium12961g00001 1513 SMART iq_5 832 854 IPR000048 GO:0005515
Vium12961g00001 1513 SMART iq_5 855 877 IPR000048 GO:0005515
Vium12961g00001 1513 SMART iq_5 784 806 IPR000048 GO:0005515
Vium12961g00001 1513 SMART iq_5 807 829 IPR000048 GO:0005515
Vium12961g00001 1513 SMART DIL_2 1334 1441 IPR002710 -
Vium12961g00001 1513 ProSiteProfiles IQ motif profile. 808 837 IPR000048 GO:0005515
Vium12961g00001 1513 ProSiteProfiles Myosin motor domain profile. 62 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium12961g00001 1513 CDD MYSc_Myo11 76 722 IPR036018 -
Vium12961g00001 1513 Gene3D Kinesin motor domain 65 664 IPR036961 -
Vium12961g00001 1513 PANTHER MYOSIN 58 1447 - -
Vium12961g00001 1513 Pfam DIL domain 1335 1438 IPR002710 -
Vium12961g00001 1513 ProSiteProfiles IQ motif profile. 785 814 IPR000048 GO:0005515
Vium12961g00001 1513 FunFam Myosin 2 314 426 - -
Vium12961g00001 1513 Gene3D - 441 625 - -
Vium12961g00001 1513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 789 885 IPR027417 -
Vium12961g00001 1513 FunFam unconventional myosin-Va 787 835 - -
Vium12961g00001 1513 Pfam Myosin head (motor domain) 64 722 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium12961g00001 1513 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vium12961g00001 1513 SMART MYSc_2a 57 735 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium12961g00001 1513 Gene3D - 11 54 IPR008989 GO:0003774|GO:0005524|GO:0051015
Vium12961g00001 1513 Gene3D - 788 834 - -
Vium12961g00001 1513 Gene3D - 737 787 - -
Vium12961g00001 1513 Gene3D - 835 884 - -
Vium12961g00001 1513 ProSiteProfiles Dilute domain profile. 1160 1459 IPR002710 -
Vium12961g00001 1513 FunFam Myosin XI D 737 786 - -
Vium12961g00001 1513 Pfam Myosin N-terminal SH3-like domain 10 52 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vium12961g00001 1513 Coils Coil 1016 1050 - -
Vium12961g00001 1513 Gene3D - 254 312 - -
Vium12961g00001 1513 Pfam IQ calmodulin-binding motif 788 806 IPR000048 GO:0005515
Vium12961g00001 1513 Pfam IQ calmodulin-binding motif 858 877 IPR000048 GO:0005515
Vium12961g00001 1513 Pfam IQ calmodulin-binding motif 834 853 IPR000048 GO:0005515
Vium12961g00001 1513 Pfam IQ calmodulin-binding motif 763 780 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12961g00001 Vium-Chr12961 18184 39799 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12961g00001 1 1512 Myosins gene family AT5G43900 75.708 0.0 2370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12961g00001 K10357 - gmx:100791070 2828.89