Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12960g00002 ATGAAGGCCATGCCCTTTCCTTTTGAGGAGTTTCAAGGGAAGGGAGTGTTGGATTTTTCTCCAGGCTCAGATTCATTTTCATTGCTTTTGCATCATCCACAAGCAAAGTGGACCATAGACAAAGAGGATTATTGCTATGTGGGCAGCACTGAGCCCACCTCAGTTCTTGATTCCAGAAGAAGCCCAAACTCTTCCACCGTGTCCTCTTCCCTTGGCAGCAGCAACACCATCAGCAAGGGTGGCAGTGGTGGTTCAACCAATAACACCACTTGTTACACCCCAACCCTTTCTCAGAACCCTCAGACAGCATTGGAAACCAGCACAGAAAAATGTGGAGTGAGAATGGAGGACTGGGAGAGTCAAGATCAATCCATTTTGAGACTAATCATGGCAGATGCTGAAGACCCTTCTGTAGGTTTGAGCAAGCTCTTCCAGGGCAGTGGCTGTGGCTCTCAGCAAACCGTTGATTTCAATGCTGGTTTTGGTGTTGTGGATCAAGGGTTGAATATGCAGCAAGTGATTGGAGAGGTGGATGAAAAGCCTCAAGTCATTAATCCCCAGTTTGAGTTAAACCAGACTCAACTTCAATTCTCTGAGAACCCATCTTTCTTTGTGCCAATGATGTACCCCCAATTGCAGGAACAGCAAGTTTTCTCTCAGCATCCAGCAAAACGCCCTGTTTTTGAGCCTGCTGGGTACAGTTATCAGGCTCCAAGGTTGCCCCTTTTGGATTCTGGGCAAGAGATGTTTGGCAGGAGGCAACAAACACAGCTTCCATTGTTTCCTCATCACATGCCACCACAGATTGTGCCATCTGCTAAACCGCAGAAGGCTAGTTCCACCGGAGAAGATGCAAGCCAGCAGCTTCAGCAGGCTATATTTGACCAGTTATACAAAACTGCTGAGCTGATAGAAGCTGGGAATCCGGTTCATGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCCCCAATTGGTAGGCCTTTTCAGAGGGCTGCTTTCTACATGAAGGAGGCCTTGTTGTCTCTGCTTCATTCAAATCCTCACAATGTCTTGGCTTTCTCACCCATCTCTTCCATTTTCAAAATCGGAGCTTACAAGTCCTTTTCGGAGATATCACCTATCATTCAGTTTGCCAACTTCACCAGTAACCAAGCCATCATTGAAGCCTTGGAAAGGTTTGATCGTATTCACATTATCGATTTTGATATTGGGTTTGGAGTGCAATGGTCTTCTTTCATGCAAGCACTTGCCATGAGGAGTAATGGTGTGCCTTCCCTCAAAATCACTGCCATTGTGTCACCCCTCTCTTATGATGAGTTTGAGCTCAATGTGACTCAAGAAAAGTTGAACCAATACGCCAAAGAAATCAACATGTCTTTTGAGCTCAATGTCTTAAGCATTGAGTCATTGAGCTCTCCTTCATGTCCACTCTCTGTTCAGTACTATGATAATGAAGCAACTGCTGTGAACATGCCACTTTCCTGTTTCACAAACTACCCTACATTGTTTCCCTTAGTCCTTCGCTTTGTGAAGCAGCTTAGGCCAAAAGTGGTAGTCACTCTTGATAGAAATTGTGACCAATTGGATGCACCATTTTCCACCAATATAGTCCATGCTCTTCATTGTTACTCAGCCTTGCTTGAATCACTTGATGCTGTGAATGTCAACCTCGACGTCCTCCAAAAGATCGAAAAGCATTTCATCTTACCAGCCCTTAAGAAAACCATAACATGTCCCCTTCGTTCACAAGAAAAACTTCCTACTTGGAGGAACATGTTTCTTCAATATGGCTTCTCTCCATTCACATTTAGCAACTTCACAGAAGCTCAAGCTGAGTGTTTGGTGCAGAAGGCACCTGTAAGGGGATTCCAATTGGAGAGAAAGCACTCATCTCTTGTTCTTTGCTGGCAGAGGAAAGAACTCATCACAGTTTCAACTTGGAGATGCTGA 1956 0.4525 MKAMPFPFEEFQGKGVLDFSPGSDSFSLLLHHPQAKWTIDKEDYCYVGSTEPTSVLDSRRSPNSSTVSSSLGSSNTISKGGSGGSTNNTTCYTPTLSQNPQTALETSTEKCGVRMEDWESQDQSILRLIMADAEDPSVGLSKLFQGSGCGSQQTVDFNAGFGVVDQGLNMQQVIGEVDEKPQVINPQFELNQTQLQFSENPSFFVPMMYPQLQEQQVFSQHPAKRPVFEPAGYSYQAPRLPLLDSGQEMFGRRQQTQLPLFPHHMPPQIVPSAKPQKASSTGEDASQQLQQAIFDQLYKTAELIEAGNPVHAQGILARLNHQLSPIGRPFQRAAFYMKEALLSLLHSNPHNVLAFSPISSIFKIGAYKSFSEISPIIQFANFTSNQAIIEALERFDRIHIIDFDIGFGVQWSSFMQALAMRSNGVPSLKITAIVSPLSYDEFELNVTQEKLNQYAKEINMSFELNVLSIESLSSPSCPLSVQYYDNEATAVNMPLSCFTNYPTLFPLVLRFVKQLRPKVVVTLDRNCDQLDAPFSTNIVHALHCYSALLESLDAVNVNLDVLQKIEKHFILPALKKTITCPLRSQEKLPTWRNMFLQYGFSPFTFSNFTEAQAECLVQKAPVRGFQLERKHSSLVLCWQRKELITVSTWRC 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12960g00002 651 Pfam GRAS domain family 295 650 IPR005202 -
Vium12960g00002 651 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 270 646 IPR005202 -
Vium12960g00002 651 ProSiteProfiles GRAS family profile. 284 650 IPR005202 -
Vium12960g00002 651 MobiDBLite consensus disorder prediction 52 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12960g00002 Vium-Chr12960 1588 4788 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12960g00002 4 651 GRAS Transcription Factor Family AT4G00150 43.137 1.06e-142 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium12960g00002 GRAS 8.7e-94 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12960g00002 - - pvu:PHAVU_010G072700g 1190.25