Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12960g00001 ATGAAGGCCATGCCCTTTCCTTTTGAGGAGTTTCAAGGGAAGGGAGTGTTGGATTTTTCTCCAGGCTCAGATTCATTTTCATTGCTTTTGCATCATCCACAAGCAAAGTGGACCATAGACAAAGAGGATTATTGCTATGTGGGCAGCACTGAGCCCACCTCAGTTCTTGATTCCAGAAGAAGCCCAAACTCTTCCACCGTGTCCTCTTCCCTTGGCAGCAGCAACACCATCAGCAAGGGTGGCAGTGGTGGTTCAACCAATAACACCACTTGTTACACCCCAACCCTTTCTCAGAACCCTCAGACAGCATTGGAAACCAGCACAGAAAAATGTGGAGTGAGAATGGAGGACTGGGAGAGTCAAGATCAATCCATTTTGAGACTAATCATGGCAGATGCTGAAGACCCTTCTGTAGGTTTGAGCAAGCTCTTCCAGGGCAGTGGCTGTGGCTCTCAGCAAACCGTTGATTTCAATGCTGGTTTTGGTGTTGTGGATCAAGGGTTGAATATGGTAAGTATTGTTGATCCTTCAGGGAATTACCCTGGTTTCCCTTTTATTGCTGAGAATATAGATGGCCATAATGGTAGTAAGACTGGTTCTTTGTCTGTTGGAGAATCCATGTTTTCTGTTTCTGGTAACAATTCTCTGTTGTTGTCAACATCTCCTGGTGGGTTTAACTCTCAGCAGCAAGTGATTGGAGAGGTGGATGAAAAGCCTCAAGTCATTAATCCCCAGTTTGAGTTAAACCAGACTCAACTTCAATTCTCTGAGAACCCATCTTTCTTTGTGCCAATGATGTACCCCCAATTGCAGGAACAGCAAGTTTTCTCTCAGCATCCAGCAAAACGCCCTGTTTTTGAGCCTGCTGGGTACAGTTATCAGGCTCCAAGGTTGCCCCTTTTGGATTCTGGGCAAGAGATGTTTGGCAGGAGGCAACAAACACAGCTTCCATTGTTTCCTCATCACATGCCACCACAGATTGTGCCATCTGCTAAACCGCAGAAGGCTAGTTCCACCGGAGAAGATGCAAGCCAGCAGCTTCAGCAGGCTATATTTGACCAGTTATACAAAACTGCTGAGCTGATAGAAGCTGGGAATCCGGTTCATGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCCCCAATTGGTAGGCCTTTTCAGAGGGCTGCTTTCTACATGAAGGAGGCCTTGTTGTCTCTGCTTCATTCAAATCCTCACAATGTCTTGGCTTTCTCACCCATCTCTTCCATTTTCAAAATCGGAGCTTACAAGTCCTTTTCGGAGATATCACCTATCATTCAGTTTGCCAACTTCACCAGTAACCAAGCCATCATTGAAGCCTTGGAAAGGTTTGATCGTATTCACATTATCGATTTTGATATTGGGTTTGGAGTGCAATGGTCTTCTTTCATGCAAGCACTTGCCATGAGGAGTAATGGTGTGCCTTCCCTCAAAATCACTGCCATTGTGTCACCCCTCTCTTATGATGAGTTTGAGCTCAATGTGACTCAAGAAAAGTTGAACCAATACGCCAAAGAAATCAACATGTCTTTTGAGCTCAATGTCTTAAGCATTGAGTCATTGAGCTCTCCTTCATGTCCACTCTCTGTTCAGTACTATGATAATGAAGCAACTGCTGTGAACATGCCACTTTCCTGTTTCACAAACTACCCTACATTGTTTCCCTTAGTCCTTCGCTTTGTGAAGCAGCTTAGGCCAAAAGTGGTAGTCACTCTTGATAGAAATTGTGACCAATTGGATGCACCATTTTCCACCAATATAGTCCATGCTCTTCATTGTTACTCAGCCTTGCTTGAATCACTTGATGCTGTGAATGTCAACCTCGACGTCCTCCAAAAGATCGAAAAGCATTTCATCTTACCAGCCCTTAAGAAAACCATAACATGTCCCCTTCGTTCACAAGAAAAACTTCCTACTTGGAGGAACATGTTTCTTCAATATGGCTTCTCTCCATTCACATTTAGCAACTTCACAGAAGCTCAAGCTGAGTGTTTGGTGCAGAAGGCACCTGTAAGGGGATTCCAATTGGAGAGAAAGCACTCATCTCTTGTTCTTTGCTGGCAGAGGAAAGAACTCATCACAGTTTCAACTTGGAGATGCTGA 2130 0.4479 MKAMPFPFEEFQGKGVLDFSPGSDSFSLLLHHPQAKWTIDKEDYCYVGSTEPTSVLDSRRSPNSSTVSSSLGSSNTISKGGSGGSTNNTTCYTPTLSQNPQTALETSTEKCGVRMEDWESQDQSILRLIMADAEDPSVGLSKLFQGSGCGSQQTVDFNAGFGVVDQGLNMVSIVDPSGNYPGFPFIAENIDGHNGSKTGSLSVGESMFSVSGNNSLLLSTSPGGFNSQQQVIGEVDEKPQVINPQFELNQTQLQFSENPSFFVPMMYPQLQEQQVFSQHPAKRPVFEPAGYSYQAPRLPLLDSGQEMFGRRQQTQLPLFPHHMPPQIVPSAKPQKASSTGEDASQQLQQAIFDQLYKTAELIEAGNPVHAQGILARLNHQLSPIGRPFQRAAFYMKEALLSLLHSNPHNVLAFSPISSIFKIGAYKSFSEISPIIQFANFTSNQAIIEALERFDRIHIIDFDIGFGVQWSSFMQALAMRSNGVPSLKITAIVSPLSYDEFELNVTQEKLNQYAKEINMSFELNVLSIESLSSPSCPLSVQYYDNEATAVNMPLSCFTNYPTLFPLVLRFVKQLRPKVVVTLDRNCDQLDAPFSTNIVHALHCYSALLESLDAVNVNLDVLQKIEKHFILPALKKTITCPLRSQEKLPTWRNMFLQYGFSPFTFSNFTEAQAECLVQKAPVRGFQLERKHSSLVLCWQRKELITVSTWRC 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12960g00001 709 Pfam GRAS domain family 353 708 IPR005202 -
Vium12960g00001 709 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 329 704 IPR005202 -
Vium12960g00001 709 ProSiteProfiles GRAS family profile. 342 708 IPR005202 -
Vium12960g00001 709 MobiDBLite consensus disorder prediction 52 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12960g00001 Vium-Chr12960 1588 4788 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12960g00001 350 709 GRAS Transcription Factor Family AT4G00150 55.372 9.24e-130 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium12960g00001 GRAS 1.1e-93 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12960g00001 - - pvu:PHAVU_010G072700g 1099.73