Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1294g00001 ATGGCTTCCTCAGTGTTTGTGAGCTTCCACGATGAAGACATCCACTTCATCACAGGTTTTGTTCTTGATCCTCTCAGAAGTAGCGGCATCCACGTCTTCGTTAAAGGTGAATCCAGAACTTTCGACCTCTTTCAAGCTATTGACCGCTCTCGCCTTTTCATTGTGGTCCTTTCCAAAAACTATGCTTCCTCAATTTGCTGTTTACGTGAACTAGTGGCCATCATCGATGCCGTTGAATCTTCTCCAAGGTCCGTTCTGCCTATTTTTGATGATGTCCAACAATCTGAGGTACTATTTCTGAATGGATGTTATGGGCAAATCTTTTCGAAACACGAAGAAAGATTTAGGGAACACAAGCAGAGGATGGAAGAAATGCAGAGATGGAGAGAAGCTCTCACACGAGTGGTTGGTTTCCCGGGTTTGAATATGGAAAATGTGACAGAACATGGAGATTTTGATTTTGTTCGATATGCAGCACATATTTTGGGTCGTGAGTTTTTAACTTCTCAAAATGAAACAATATCCAGCACATATGGAAAATTTGACGATATTGTTCAATATAAAGATGGAGATGAAGTTTCATACAAGGAGCTGCGAGGTTTGATTAGGTTAAGGGATTTTATCAGCCTCGTGTTGACTTATCCAGTGAAGTTAGAAGAGGACGGTGTATTAAGATCCTGGATTAGTGCATTTCCTGAATGGAAAGCTCAGTTATTTTCCACTGATGGTTTTCCTGGGATTTGTAAACCATGGAGTCTATTAACCGAGAAGGCACTGGGATGCATGAAAGGATTCATGCCAGTGGAAATAATGGCTGAAATAGAAAGTGGCGAGAGATCCCTCTTCAACCGCCATAATGATGTAATACCAGAAGGCCTTCTCCCCCTAAGTGTTGATCTCGCAGTTGACCAACTAATTCAAACTTTGTTTACTGTAGATTACTGTGCGCGCTATATCAGATTGTTGACCAGAAACTCGTCTGAAAAAGAATCTGTAGTAAACAAAATACATACAGCCTTGGAAGCTAAACACAACATGTTTGGAAATGACCAAGATTTTCTGATGGCCGTATGGATCAATGCCTTAACATGTGAGACTGATGCGGAGGTTCACGTTCAAGAAGAAATCAATAAGATCATGGTGAGTATTTCTATGACAGAAGGTGACGACATGTTAACTACACTAGACACTGACAAAAAGAAGAGCAGCAATAGGCTGTTGGTGATTGTAGTGGATGCAGATAGCAACAGGAAGCTGGACCTCCAAAAAGTGCAATTTCCAAGTGGCATAGTGGTGTTGATAGCAACTGAGTCTTCAACACAAGCGATGAAGGATGATGACTTTGGAATTGCATGCACAATGGATTTGAATATTTGGACCCAGGATCATATGTTGCCTTGGAAACTCTTCTATACGTATGTGCGAAGTTGTATTAGCTGTAGCACAGTGGATTCATCAATGACCATTCAGAAAATAGCGGTGGAAATAGTCAAGAAAAGCCATGGCCATCTTCTTGCCATTGTCCTTGTGGCAAAACATCTTAGGTATGTGAAAGATGATAAATACTGGGAGCTTGTACTTGACAAATTAAGCAACCCGAATCCTTTCTATGATTATCAAGATTGTGACCGAATTGGCATCAGTAGAGTCATGGTCAATGCATTTGTAAATATTATTTGGGAAGACATCGATGATGAACTAAAGCTTTGCCTCCAACTCAGTTTACCTGTTCACAACATTAAGAATGGGGTGAGAGATGATATCTTGGTTTCTTATTGGGCTAATACATTACGATACACACAAGAGCTTGGTGAATACAAGAGACAGTTACAATATTACCTCGAGGAGCTTCTAGACTGTTTTCTCTTGTTGAAATTTGAAAGTAGAGATGTCTGTTTGCCAATAGAAACCTATGATATAATTAAATCATTACAAATCTCAAAACCTTCCATCATATGGCATGGTGCATTAGGATTGACGGATATTGGACAATGGCATAGTCTTATTCAGATAGAATTGGTTAACAATAAAATATGTGAACTGCCACAATCACCAGACTGCCCCAAACTCAAAGTGTTGTTGTTGCAGGGCAATGCTGATTTATTGGATATCCCTGATTTATTTTTCGACCACATGCCTCTACTTCAACACTTGGACTTATCCTACACTAGTATAAGGGATTTGCCCCCTTCTCTCGCCAAATTGATGCAACTTAAGAAACTATATCTTAAAGGTTGTGATCTCTTCATGGAAATATCCCCGCAAATTTTTCAGCTGAAGAATCTTGAAGAGCTTGATCTTCACGGGACTTTGATAACGCATTTGCCAAAAGACATTAGAGAATTGATCAACCTGCAACGCCTAGTCCTATGCTTTGATGCATACCATCAAGTACTTAGTCGTGGTAAAAAGGGCAAGCAGATTTCTAACACAATGATAATTCCTCCAGGAGTGATATCAAATCTTACTCAGTTGAATTATCTAAGCCTTGACGTCGACCCTGAAGATGAGCAATGGAGCGAGAACGTTAATGGTGTCTTGATGGAAATTTTGGGACTAGAGGAGTTGAAGACGGTGAGCATATATGTTCCAGAGGCTGATCTCTTGGAACTCATACCGGCCAAAAAATTTCTCAATTTCCGATTGGTTGTTGGTCATCACATGCGGCGTCTAATATCCCGTGTAACACCTGAACTAGAGACAAAATTCAAACATTTTGACTATAGCATGAAGTTTGTTAATGGTGTAAATGTTCCCAATGGTGTAAAGATGAATCTTGGTCGCTTCAAGGCTTTGTACCTTGACCGACATATGACCAGCAAGAGTCTCTCGGATTTCAATTTGAACAACGTACGCATGTTGAAAGTTTGCATATTGGCGGAATGTAATGAAATGGAAACAATTGTCGATGGTGATTATTCACCTGATGAAGATTTTTCTCTAATGTTGGAGTTGTTGAGTGTATTTTATATGAAGAATTTAAGAAGCATTTGCCAAGGGTGTGGTCCCTTTTCCTACTTAAAGTATATGGCATTACACACTTGCCCCATGTTAACTACTATCTTCAACTTACGTAATTTTATCAGCCTTCCCTTTTTGGAAGAGATTCATGTTGAAGACTGTCCAAAAGTAACGACCCTAATAAGTGATGACTCACCAAAACGTAAACCAGCGTTTTCCCTGCCCAAGTTGAGAGTGATGTCGCTTCTTTATCTTCCCAACTTGGTGAATATTTTTAATGGCCTGCGTGTTGAACATGTTTTAGAAGAAATGATTTTTTATTGTTGCCCAAAACTCCAAAGTCTTTCCAGATCAGAGTTGCCATGGGTATTTTTGAAGTTCATCAAAGGAGAAAGCATATGGTGGGAAGCATTGAAATGGAGAGTATCCGAGTGGGGTTATGGTGGTCGACCCAAATTCTTTGAGCAATTTTTTAAACCAATTAATGTGGAGGTTGGCATGATGAACCCACCATCCGCACATCAAGAGACTCAACTAAATAAATATCTCGGCGGAATGTATCAGGGAGTTTCAAGCTCTACCGAGTTGATGACGAAGTTACATTTAGAAACGCCTCGTTTGTTGCCTTCAACCCCATTTCCGTTATCGGACAGTAAAGAAGGTGAAGCCCAAAAGCGGAAAGCCGTTATTGAGCCAATAGTAGTACCACCGTTGTTAAGAAGGAAACCAAACCAGGGTATTTATAAAAGAAGACTTCTCCGCCAAGCTGTGAAAGAGATACGTACTGATCAGACTTTAGATGATGGATTTAGCTGGAGAAAATATGGGCAGAAGAACGTTCTTGGAGCTAAGTATCCGAGAGCATATTACCGCTGCACGCATAAAAGCACACAAGGGTGCCCAGCAACAAAACAAGTTCAAAGGTTAGATGGCGACCCAACAACATTTGAGTTAACTTACATCGGAACTCATAGTTGCACCCAAAAACAGGATTTAATAGCAGAAAGTGGAGATGCCGAAGTATTAGTAGCAGAAAGTAGAGATGCCAAAGTATTAGTAGCAGAAAGTGGAGATGCCGAAGTATTAGAAGATTTTTGGGGAAAAGCAAATTCTGCATCATCTAGCAACAAAAGTTCTATTACTGTTTTGGAGGGAACATCACCTGAACCAAAACAACTTCAGATGAGTCTACCTTCAGAAGATGATTTAGATTTTGGTCTATTTACATTTTTAGATGACCTAATTTAA 4209 0.3994 MASSVFVSFHDEDIHFITGFVLDPLRSSGIHVFVKGESRTFDLFQAIDRSRLFIVVLSKNYASSICCLRELVAIIDAVESSPRSVLPIFDDVQQSEVLFLNGCYGQIFSKHEERFREHKQRMEEMQRWREALTRVVGFPGLNMENVTEHGDFDFVRYAAHILGREFLTSQNETISSTYGKFDDIVQYKDGDEVSYKELRGLIRLRDFISLVLTYPVKLEEDGVLRSWISAFPEWKAQLFSTDGFPGICKPWSLLTEKALGCMKGFMPVEIMAEIESGERSLFNRHNDVIPEGLLPLSVDLAVDQLIQTLFTVDYCARYIRLLTRNSSEKESVVNKIHTALEAKHNMFGNDQDFLMAVWINALTCETDAEVHVQEEINKIMVSISMTEGDDMLTTLDTDKKKSSNRLLVIVVDADSNRKLDLQKVQFPSGIVVLIATESSTQAMKDDDFGIACTMDLNIWTQDHMLPWKLFYTYVRSCISCSTVDSSMTIQKIAVEIVKKSHGHLLAIVLVAKHLRYVKDDKYWELVLDKLSNPNPFYDYQDCDRIGISRVMVNAFVNIIWEDIDDELKLCLQLSLPVHNIKNGVRDDILVSYWANTLRYTQELGEYKRQLQYYLEELLDCFLLLKFESRDVCLPIETYDIIKSLQISKPSIIWHGALGLTDIGQWHSLIQIELVNNKICELPQSPDCPKLKVLLLQGNADLLDIPDLFFDHMPLLQHLDLSYTSIRDLPPSLAKLMQLKKLYLKGCDLFMEISPQIFQLKNLEELDLHGTLITHLPKDIRELINLQRLVLCFDAYHQVLSRGKKGKQISNTMIIPPGVISNLTQLNYLSLDVDPEDEQWSENVNGVLMEILGLEELKTVSIYVPEADLLELIPAKKFLNFRLVVGHHMRRLISRVTPELETKFKHFDYSMKFVNGVNVPNGVKMNLGRFKALYLDRHMTSKSLSDFNLNNVRMLKVCILAECNEMETIVDGDYSPDEDFSLMLELLSVFYMKNLRSICQGCGPFSYLKYMALHTCPMLTTIFNLRNFISLPFLEEIHVEDCPKVTTLISDDSPKRKPAFSLPKLRVMSLLYLPNLVNIFNGLRVEHVLEEMIFYCCPKLQSLSRSELPWVFLKFIKGESIWWEALKWRVSEWGYGGRPKFFEQFFKPINVEVGMMNPPSAHQETQLNKYLGGMYQGVSSSTELMTKLHLETPRLLPSTPFPLSDSKEGEAQKRKAVIEPIVVPPLLRRKPNQGIYKRRLLRQAVKEIRTDQTLDDGFSWRKYGQKNVLGAKYPRAYYRCTHKSTQGCPATKQVQRLDGDPTTFELTYIGTHSCTQKQDLIAESGDAEVLVAESRDAKVLVAESGDAEVLEDFWGKANSASSSNKSSITVLEGTSPEPKQLQMSLPSEDDLDFGLFTFLDDLI 1402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1294g00001 1402 MobiDBLite consensus disorder prediction 1357 1381 - -
Vium1294g00001 1402 Gene3D - 2 162 IPR035897 -
Vium1294g00001 1402 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 140 IPR035897 -
Vium1294g00001 1402 MobiDBLite consensus disorder prediction 1357 1384 - -
Vium1294g00001 1402 SUPERFAMILY WRKY DNA-binding domain 1249 1315 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1294g00001 1402 Pfam Leucine rich repeat 688 748 IPR001611 GO:0005515
Vium1294g00001 1402 Gene3D WRKY domain 1240 1315 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1294g00001 1402 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 329 1132 - -
Vium1294g00001 1402 SMART LRR_typ_2 712 735 IPR003591 -
Vium1294g00001 1402 SMART LRR_typ_2 759 782 IPR003591 -
Vium1294g00001 1402 Gene3D Ribonuclease Inhibitor 918 1109 IPR032675 -
Vium1294g00001 1402 Pfam TIR domain 27 145 IPR000157 GO:0007165
Vium1294g00001 1402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 392 571 IPR027417 -
Vium1294g00001 1402 ProSiteProfiles WRKY domain profile. 1248 1312 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1294g00001 1402 SMART till_3 2 138 IPR000157 GO:0007165
Vium1294g00001 1402 Gene3D Ribonuclease Inhibitor 628 849 IPR032675 -
Vium1294g00001 1402 ProSiteProfiles TIR domain profile. 1 159 IPR000157 GO:0007165
Vium1294g00001 1402 SMART WRKY_cls 1253 1315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1294g00001 1402 Pfam WRKY DNA -binding domain 1254 1313 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1294g00001 1402 Gene3D - 465 543 IPR042197 -
Vium1294g00001 1402 SUPERFAMILY L domain-like 662 1069 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1294g00001 Vium-Chr1294 1224 16371 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1294g00001 1236 1315 WRKY Transcription Factor Family AT4G23810 59.302 1.78e-27 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium1294g00001 TIR 2.7e-16 CL0173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1294g00001 - - vum:124825720 2756.86