Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12944g00001 ATGGATGGTGATAATGGTCTCAACATCCGTAACTGGGGTTACTATGAACCGGCCACATCGTTTAAGAGCCATCTGGGGCTGCAGCTGATGTCATCCATGCCGGAAAAGCCTTTAATCGGAGGGCGCAATGCTGCGGTTTTATCTGCTACAAATGGGGCATTTCACCACAGAGACATTGGTATGTCCCACGCTACATACCCTATGGAATACGTGAGAGATGCTTGGATTAGTAGTCAGAGAGACAAGTATATGAATATGATACCTACAAATCATAACTATGGTAGTATTCCAGAGACATCTTCGGCACATCAAATTCAAATGATTCCACCGCCGGAATTGCCGAAGGAAGAAAGGGAAGTGGAAGAGGAAGCTGTTGTTGAGAAGGCAACTGGGGGCAGTCGTAAGAAAAGACAGAGTCCTAAGGTGCCGAAATCTCCCAAGGCAAAGAAGTCCAAGAGGGGCCCTCGTGTGCCAAAGAATGAGAATGCTCCCACAGTTCATCGT 504 0.4722 MDGDNGLNIRNWGYYEPATSFKSHLGLQLMSSMPEKPLIGGRNAAVLSATNGAFHHRDIGMSHATYPMEYVRDAWISSQRDKYMNMIPTNHNYGSIPETSSAHQIQMIPPPELPKEEREVEEEAVVEKATGGSRKKRQSPKVPKSPKAKKSKRGPRVPKNENAPTVHR 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12944g00001 168 MobiDBLite consensus disorder prediction 135 154 - -
Vium12944g00001 168 MobiDBLite consensus disorder prediction 94 168 - -
Vium12944g00001 168 PANTHER - 1 162 IPR010409 -
Vium12944g00001 168 MobiDBLite consensus disorder prediction 112 134 - -
Vium12944g00001 168 SMART GAGA_bind_2 1 168 IPR010409 -
Vium12944g00001 168 Pfam GAGA binding protein-like family 1 163 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12944g00001 Vium-Chr12944 3055 4170 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12944g00001 1 153 BBR or BPC Transcription factor family AT2G01930 39.264 3.62e-24 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Vium12944g00001 GAGA_bind 3.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12944g00001 - - vum:124821733 299.286