Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12943g00004 ATGGCGTTCTTAAATAAAATTGGAAATCTACTCAAGAATTCTGCTGTCAAGCACATGAATCAAGATTTTTCTATGTCTAGCCCCTCACTTTTCCAAGCAATTAGATCAATGTCATCTGCAAAGCTTTTTGTCGGAGGTATTTCTTACAGCACTGATGATATGAGCCTGCGGGAGGCATTTGCTCGCTATGGAGAAGTTCTTGATGCCAAGGTTATTATGGATCGTGAAACTGGTAGGTCAAGAGGTTTTGCCTTCATAACCTTTGCAACAAGTGAGGATGCATCTTCTGCAATTCAGGCCTTGGATGGTCAGGATCTTCATGGTCGGAGAATTCGGGTGAATTATGCTACAGAAAGGGCACGTCCAGGGTTCGGTGGTGGTGGAGGTGGCTATGGTGGAGGTGGTGGGTATGGTGGTGGTGGTTATGGTGGTGGTGGTGGTGGCTATGGTGGAGGTGGATATGGCGACAGCAGGGGTGGAAGTTATGGCGGTGATAGTTATGGAGGAAACAACAGCAGGGGTGGAAGCTATGGAGGTGGTGGTGGTTTTGGTGTTACAGGAAGCTATGGCGGTGGCAATGCTGAAACTAGTAATTACCAATTTGGTGGAAATTCTGGTGGAGATCTTGGCTCAGCTAGTGGTGAATTCGGAAGCAAGCAAAATGAAGGAACAGGTGCAGCAGACAATTATGAATTCAATGAGCCACTTGAAGACAATGTGAGGGGGAACAGTGATGAACCTGATGACTATGCTCAGACCCGCAGGAGTTGA 771 0.4695 MAFLNKIGNLLKNSAVKHMNQDFSMSSPSLFQAIRSMSSAKLFVGGISYSTDDMSLREAFARYGEVLDAKVIMDRETGRSRGFAFITFATSEDASSAIQALDGQDLHGRRIRVNYATERARPGFGGGGGGYGGGGGYGGGGYGGGGGGYGGGGYGDSRGGSYGGDSYGGNNSRGGSYGGGGGFGVTGSYGGGNAETSNYQFGGNSGGDLGSASGEFGSKQNEGTGAADNYEFNEPLEDNVRGNSDEPDDYAQTRRS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12943g00004 256 Gene3D - 12 138 IPR012677 -
Vium12943g00004 256 PRINTS Eggshell protein signature 36 52 - -
Vium12943g00004 256 PRINTS Eggshell protein signature 180 198 - -
Vium12943g00004 256 PRINTS Eggshell protein signature 123 138 - -
Vium12943g00004 256 PRINTS Eggshell protein signature 149 159 - -
Vium12943g00004 256 MobiDBLite consensus disorder prediction 196 256 - -
Vium12943g00004 256 SUPERFAMILY RNA-binding domain, RBD 23 150 IPR035979 GO:0003676
Vium12943g00004 256 FunFam Glycine-rich RNA-binding protein 3 mitochondrial 21 146 - -
Vium12943g00004 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Vium12943g00004 256 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 32 207 - -
Vium12943g00004 256 SMART rrm1_1 41 114 IPR000504 GO:0003723
Vium12943g00004 256 MobiDBLite consensus disorder prediction 234 256 - -
Vium12943g00004 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Vium12943g00004 256 CDD RRM2_NsCP33_like 41 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12943g00004 Vium-Chr12943 21394 24431 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12943g00004 42 119 Eukaryotic Initiation Factors Gene Family AT1G49760 34.615 1.04e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12943g00004 K12741 - gmx:100818300 295.049