Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12943g00003 ATGGCGTTCTTAAATAAAATTGGAAATCTACTCAAGAATTCTGCTGTCAAGCACATGAATCAAGATTTTTCTATGTCTAGCCCCTCACTTTTCCAAGCAATTAGATCAATGTCATCTGCAAAGCTTTTTGTCGGAGGTATTTCTTACAGCACTGATGATATGAGCCTGCGGGAGGCATTTGCTCGCTATGGAGAAGTTCTTGATGCCAAGGTTATTATGGATCGTGAAACTGGTAGGTCAAGAGGTTTTGCCTTCATAACCTTTGCAACAAGTGAGGATGCATCTTCTGCAATTCAGGCCTTGGATGGTCAGGATCTTCATGGTCGGAGAATTCGGGTGAATTATGCTACAGAAAGGGCACGTCCAGGGTTCGGTGGTGGTGGAGGTGGCTATGGTGGAGGTGGTGGGTATGGTGGTGGTGGTTATGGTGGTGGTGGTGGTGGCTATGGTGGAGGTGGATATGGCGACAGCAGGGGTGGAAGTTATGGCGGTGATAGTTATGGAGGAAACAACAGCAGGGGTGGAAGCTATGGAGGTGGTGGTGGTTTTGGTGTTACAGGAAGCTATGGCGGTGGCAATGCTGAAACTAGTAATTACCAATTTGGTGGAAATTCTGGTGGAGATCTTGGCTCAGCTAGTGGTGAATTCGGAAGCAAGCAAAATGAAGGAACAGGTGCAGCAGACAATTATGAATTCAATGAGCCACTTGAAGACAATGTGAGGGGGAACAGTGATGAACCTGATGACTATGCTCAGACCCGCAGGACTAGAGGAGGGCATGATCGCCAAAAAGCACGCCACATCTTTTGCAGCAATTTTACCAATGAAGGAAAAAGTCACAATACACGCTCCTACTCCTCCAAAATTGAAAACCCTGTCAAACATACAAACCAATGGCCCAACAGACAGGTCCAGTGTCAGGCTTTTAGCTTCATAGGTCAGAGAAAATACCTGGAATATGAAGCATTACAGTCAGCACAAAAATACACGTTTAAATCGGAACAGATCTAA 1011 0.457 MAFLNKIGNLLKNSAVKHMNQDFSMSSPSLFQAIRSMSSAKLFVGGISYSTDDMSLREAFARYGEVLDAKVIMDRETGRSRGFAFITFATSEDASSAIQALDGQDLHGRRIRVNYATERARPGFGGGGGGYGGGGGYGGGGYGGGGGGYGGGGYGDSRGGSYGGDSYGGNNSRGGSYGGGGGFGVTGSYGGGNAETSNYQFGGNSGGDLGSASGEFGSKQNEGTGAADNYEFNEPLEDNVRGNSDEPDDYAQTRRTRGGHDRQKARHIFCSNFTNEGKSHNTRSYSSKIENPVKHTNQWPNRQVQCQAFSFIGQRKYLEYEALQSAQKYTFKSEQI 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12943g00003 336 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 142 - -
Vium12943g00003 336 MobiDBLite consensus disorder prediction 234 264 - -
Vium12943g00003 336 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Vium12943g00003 336 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 33 207 - -
Vium12943g00003 336 SUPERFAMILY RNA-binding domain, RBD 24 150 IPR035979 GO:0003676
Vium12943g00003 336 PRINTS Eggshell protein signature 36 52 - -
Vium12943g00003 336 PRINTS Eggshell protein signature 123 138 - -
Vium12943g00003 336 PRINTS Eggshell protein signature 149 159 - -
Vium12943g00003 336 PRINTS Eggshell protein signature 180 198 - -
Vium12943g00003 336 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Vium12943g00003 336 SMART rrm1_1 41 114 IPR000504 GO:0003723
Vium12943g00003 336 MobiDBLite consensus disorder prediction 210 264 - -
Vium12943g00003 336 CDD RRM2_NsCP33_like 41 116 - -
Vium12943g00003 336 Gene3D - 17 153 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12943g00003 Vium-Chr12943 17884 24431 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12943g00003 42 119 Eukaryotic Initiation Factors Gene Family AT1G49760 34.615 1.92e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12943g00003 K12741 - gmx:100818300 295.049