Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12926g00001 ATGGAGGAAACATCTTCTCCTGAAGTTGTAGATTCAGAGTTATTGCTATCTATGAGTCTCGGCAATAACCAAATGGTCGGTGAGTCCTCATCCATGCCCATTTGCAATTCTCCAAAACTAATAGAAAACCCTAATCATCAATTGATTGTGCCAAAGCAACGACAATTCTCATGCAAGTTTTGCAACAAAAAGTTTCCAAGCTCTCAAGCCTTAGGAGGGCATCAAAATGCTCACAGACGTGAAAGAGTTCTCTCAAGGATAGATAGAGAGTTTGATATGGGAACTTTTGGACTTGGTGTTCATATGTACCCTTATTCAACCATGGCTCATCAACACCCTTTTCGTGCTCCGATTCCCTTTTTTTATGAGACTAACATGCACCCTATGACTCAAATGTCACCATGCCATGGCCATTTCTACCTAGCTATGGAAATCAAGGGCTACACACACCTCCACTTCAGGGCAACGATTTGGTATGGCCAACCTTGGAGGCTTAAATGTTGA 504 0.4226 MEETSSPEVVDSELLLSMSLGNNQMVGESSSMPICNSPKLIENPNHQLIVPKQRQFSCKFCNKKFPSSQALGGHQNAHRRERVLSRIDREFDMGTFGLGVHMYPYSTMAHQHPFRAPIPFFYETNMHPMTQMSPCHGHFYLAMEIKGYTHLHFRATIWYGQPWRLKC 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12926g00001 167 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Vium12926g00001 167 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 42 138 IPR044246 GO:0009788
Vium12926g00001 167 SUPERFAMILY beta-beta-alpha zinc fingers 53 83 IPR036236 -
Vium12926g00001 167 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Vium12926g00001 167 Gene3D Classic Zinc Finger 39 92 - -
Vium12926g00001 167 Pfam C2H2-type zinc finger 56 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12926g00001 Vium-Chr12926 1643 2146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12926g00001 54 145 C2H2 Transcription Factor Family AT1G24625 38.043 1.30e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium12926g00001 zf-C2H2_6 1.4e-06 CL0361