Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12922g00001 ATGAGAGGGAAAGAACAACGTGGAGCGGAAGACTCGTTCTTCGCTCCAAATGCTTCTGCCGCTCACCACAATTTGGGCTCACCAAACCACCGCAGGCCCACACGTAGAAACCGAGGCCCACACCAATCGAACTTGAAATACCGTGTCGTGAACAAGCCTGAAGCGGTTTCTTCCTTCAACTCTCACTCCGTTGAGGATGTCAATGTGGGCGTAACTGTCGCATCCCTAAATCACCATGGCGAGGACGCGGACGGTGCCTCCGAGCTCAACACCGTTGACGGCACTGATCGCGTGACTTATTCCAGCAAGGTCGGGGAAGGATGCGGCGATGATGATGATGATGATGATGATGGTGATGGTGATGGTGATGGTGAGGGCGATATTCAGACCAGACTTGATAAGCTGCTCTGTAAAATTGAGGAACCTGATTTGTCCGAGGAGCAGATCAGAATCAATGATCAATTGCAACAAGATGAGATACTTGTGGTGGAGTCAATTTATGGAGAAAATGTTTTCGGCCTTGAGAGATGGAAAGGCTTGCGTTGCTTTCAGATACATATACACATTGATGTTTTGGGTGAAATAGCCATCACAGCTAAGTTGAACTCTCTTAATCAACTTGAGACTGTAAGCCGCAGTTCAGATGAATTCTTATACACTTTCAAAGTCCACTATCTTCCACCGGTTGTTTTGACTTGTTTACTACCTAAGTCGTACCCTAGCCACCAACCACCTATTTTTACACTCTCTGTTAAGTGGTTGGAACCTGTGAAGATTCTGAGACTGTGTTCCAAGTTGGATTCAATATGGGCTGAACAACAAGGGCAGGAAGTAATTTACCCTTGGGTAGAATGGTTGCATGGTTCTTCTCTTTCTCATCTGGGATTTGATGAAGAAATCACACTTGGGCCTTATGGCATGAATGTTGTCCAGGATGAGCGTGTTGTTTCAGGAGCTGAGTGCATTGACATTGATATTCCTTTTCTACGAAATTACAATGATAAGAGACACAATGAGAACTTCCTCAAAGAATTACATCAATGTAACATTTGCTTTGGTGAATATGCAGGTTCCGAGTTTATCCGGATACCATGTATGCATTTTTTTTGCCTCAAATGCTTGCAGACCTTTGCCCAGATACATGTAAAGGAAGGAACTGTTAGTAATCTTCAATGTCCTGAAGCAAAATGTACAGTCATGATTCCACCTGGCCTTTTAAAACACTTGCTAGATGACAGAGATTATGAGCGCTGGGAATCCATGATGTTGGAAAAAACACTTGCATCAATGTCTGATGTTGTTTATTGTCCAAGATGTGAAACCCCCTGTATAGAGGATGAAGACCAGCATGCTCAATGCCCAAAATGTTATTTTAGTTTTTGTACCCTTTGCAGGGAACGACGCCATGTTGGCATAGCATGCATGAGTCTTGATATGAAGCTTCAGATTTTGCAGGTATGTTATATTTGGATCCAAGATGGGATGAATGGTTTAGTTGTCAATTGTTGTCAGACTCACAGCTATGAAATGTCTTTTTGGTGA 1542 0.4351 MRGKEQRGAEDSFFAPNASAAHHNLGSPNHRRPTRRNRGPHQSNLKYRVVNKPEAVSSFNSHSVEDVNVGVTVASLNHHGEDADGASELNTVDGTDRVTYSSKVGEGCGDDDDDDDDGDGDGDGEGDIQTRLDKLLCKIEEPDLSEEQIRINDQLQQDEILVVESIYGENVFGLERWKGLRCFQIHIHIDVLGEIAITAKLNSLNQLETVSRSSDEFLYTFKVHYLPPVVLTCLLPKSYPSHQPPIFTLSVKWLEPVKILRLCSKLDSIWAEQQGQEVIYPWVEWLHGSSLSHLGFDEEITLGPYGMNVVQDERVVSGAECIDIDIPFLRNYNDKRHNENFLKELHQCNICFGEYAGSEFIRIPCMHFFCLKCLQTFAQIHVKEGTVSNLQCPEAKCTVMIPPGLLKHLLDDRDYERWESMMLEKTLASMSDVVYCPRCETPCIEDEDQHAQCPKCYFSFCTLCRERRHVGIACMSLDMKLQILQVCYIWIQDGMNGLVVNCCQTHSYEMSFW 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12922g00001 513 SUPERFAMILY RING/U-box 343 427 - -
Vium12922g00001 513 MobiDBLite consensus disorder prediction 79 126 - -
Vium12922g00001 513 Pfam IBR domain, a half RING-finger domain 416 474 IPR002867 GO:0008270
Vium12922g00001 513 CDD BRcat_RBR_RNF14 427 478 - -
Vium12922g00001 513 Pfam RWD domain 154 287 IPR006575 GO:0005515
Vium12922g00001 513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 431 IPR013083 -
Vium12922g00001 513 SMART RWD2001b 158 293 IPR006575 GO:0005515
Vium12922g00001 513 FunFam RBR-type E3 ubiquitin transferase 343 427 - -
Vium12922g00001 513 SUPERFAMILY RING/U-box 416 478 - -
Vium12922g00001 513 SUPERFAMILY UBC-like 152 287 IPR016135 -
Vium12922g00001 513 ProSiteProfiles TRIAD supradomain profile. 344 513 IPR044066 -
Vium12922g00001 513 MobiDBLite consensus disorder prediction 108 123 - -
Vium12922g00001 513 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 206 478 IPR031127 GO:0004842|GO:0016567
Vium12922g00001 513 SMART ibrneu5 416 474 IPR002867 GO:0008270
Vium12922g00001 513 SMART ring_2 348 395 IPR001841 -
Vium12922g00001 513 ProSiteProfiles Zinc finger RING-type profile. 348 396 IPR001841 -
Vium12922g00001 513 MobiDBLite consensus disorder prediction 1 48 - -
Vium12922g00001 513 Gene3D Ubiquitin Conjugating Enzyme 145 294 IPR016135 -
Vium12922g00001 513 ProSiteProfiles RWD domain profile. 158 293 IPR006575 GO:0005515
Vium12922g00001 513 CDD RING-HC_ITT1-like 342 401 - -
Vium12922g00001 513 ProSitePatterns Zinc finger RING-type signature. 365 374 IPR017907 -
Vium12922g00001 513 MobiDBLite consensus disorder prediction 28 42 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12922g00001 347 481 ARIADNE family AT2G31780 21.986 2.09e-08 54.7