Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12914g00001 ATGATTGTGATTACTGTATGGGACATTGACGTTGGCCACATTAAAGTTTATTCAACCGTTGGTGCTGACAAAAAGTGCTTCTGTAGCCTTCATTTACGAGAGAGAGAGAGAGAGAGAGTTGGGAGGGAAGTGAGAAGAAGTGTGAGAATGGATGATAAGTATAGTCACATCCACACCTCTCCCCTTGCCTTCGCACTCACCGTCTCTTTATTACTCTTCATCGCTTTGCCATACTCCCACTCTCAACCACCACCACCGCTCTGTGCTCAGCAGTTATACAGGTGCAACTGGAACGTTTCCGCCATCTTCGATCCTCCCTGGGAAAAGATTCCACCCTCTCAATGTAACGGCCCCAACAAATCATTCCTGCTCACCTGCCATGCTCATTATGAATCTCAAAATTTCACAGTGAAAGATATCGACAACACCACTCACACCATGAAACTGATGCCAAGACCCCCTGTCGACCATGTCTGTTCTACTCACCTTTTTGACGGCTACCAGAACTTCGATTACGATAACTTCAACAGCACTCTGCTCCAGTATAACGCGTCAGTGCGTAAAATCATCATATTTGAGCATTGTCCTACAATCCCAAATTTCCCTTTAAAACGCAAGTTTACGTGCGCGGATGTTGTGTATTATTTTGAGGAGGGGTACACGGAAAAGGAGATGCTCCACAAATACCCACCGCTTAAGGATTGCAATAGACGTTTGAACGTGCCTGCTGCCGGTCCTCTGGATCGTTACGATGACACTGATGACGGAGCTGGAGTTCTGGAAGAAGCTCTCAATGATGCGTTTAAGGTCAACTATAGTATTCCTCGTGGCTGCACAAGATGCAGAGAAAGTGACGAAAGTTGCTCACCGTATGGTTATGGTTATGATGAACGTCTAGTTTCATGCAACTATTGCCCAAATGAACAGTGTTCTCTCGACACAGGTACTTTCATTGGAGCAATAGGAATATTGATATGCCTCGTAATAGGTTGTAGAAAATGTATGTCATCAAGAAGAACGGCTAATGAGCAAGATATTGAAGTATTCTTAAGAGATCATGGAACTCTAGCACAAAAGAAATATAAATTTTCAGAAGTCAAGAAAATGACCAAGAACTTCACAGTTAAACTGGGTGAAGGTGGGTTTGGTGTTGTATACAAAGGAGAGTTACGCAATGGTTACCATGTGGCTGTAAAATTATTAACGGCATCAAAAGGAAATGGCAAAGACTTTATGAACGAGGTTGCCAGTATCAGTAGAACTTCTCATGTTAATATTGTCCAACTTCTTGGATTCTGTTTAGAAGGAAAGAAGAAAGCCCTTATTTATGAATTCATGCCTAATGGTTCCCTCGACAAGTTTATCGGTAATAAGGGACTAGAAAGCACTCCATCCTTGAGTTGGGATAATCTGTTGCAAATTGCAAAAGGGATAGCGAGAGGACTAGAGTACCTGCACAAGGGATGCAACACTCGTATTTTACACTTTGACATAAAACCACATAACATTCTTTTGGATGACAACTTCTGTCCCAAGATATCAGACTTTGGGCTTGCAAAACTTTGTCCTGGGAAAGAGAGCACTATTTCAGTTTCAGATGCGAGAGGAACAATAGGATATGTAGCTCCAGAAGTGTGCAACAAACATTTTGGTGGAGTTTCACAAAAATCTGATGTGTATAGCTATGGAATGATGCTACTAGAAATAGTGGGAGTGAGGAACAATGTTAATGAAGAAACCACTGAAACAAGTGAATACTTCCCAGATTGGATATACCGAAAGCTGGAGGAAGACCAAGATTTGAGAAGTGATATAGTCACAGAAGAAAAAGAGACAGAAAGGAGAATGATTACAGTTAGTTTGTGGTGCATTCAAACGTTTCCAAAAGATAGACCAACTATGAGTAGAGTAATAGAAATGTTAGAAGGCAACATGAATTCCCAAGAAATACCCCCAAAACCTGTTCTTTCTTATCCCTCCACTGGATTGGTGCCAGAATGGACCACTAGTTCCTTGCAGTCTGAGTAG 2028 0.4191 MIVITVWDIDVGHIKVYSTVGADKKCFCSLHLRERERERVGREVRRSVRMDDKYSHIHTSPLAFALTVSLLLFIALPYSHSQPPPPLCAQQLYRCNWNVSAIFDPPWEKIPPSQCNGPNKSFLLTCHAHYESQNFTVKDIDNTTHTMKLMPRPPVDHVCSTHLFDGYQNFDYDNFNSTLLQYNASVRKIIIFEHCPTIPNFPLKRKFTCADVVYYFEEGYTEKEMLHKYPPLKDCNRRLNVPAAGPLDRYDDTDDGAGVLEEALNDAFKVNYSIPRGCTRCRESDESCSPYGYGYDERLVSCNYCPNEQCSLDTGTFIGAIGILICLVIGCRKCMSSRRTANEQDIEVFLRDHGTLAQKKYKFSEVKKMTKNFTVKLGEGGFGVVYKGELRNGYHVAVKLLTASKGNGKDFMNEVASISRTSHVNIVQLLGFCLEGKKKALIYEFMPNGSLDKFIGNKGLESTPSLSWDNLLQIAKGIARGLEYLHKGCNTRILHFDIKPHNILLDDNFCPKISDFGLAKLCPGKESTISVSDARGTIGYVAPEVCNKHFGGVSQKSDVYSYGMMLLEIVGVRNNVNEETTETSEYFPDWIYRKLEEDQDLRSDIVTEEKETERRMITVSLWCIQTFPKDRPTMSRVIEMLEGNMNSQEIPPKPVLSYPSTGLVPEWTTSSLQSE 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12914g00001 675 FunFam PR5-like receptor kinase 446 653 - -
Vium12914g00001 675 Pfam Protein tyrosine and serine/threonine kinase 374 641 IPR001245 GO:0004672|GO:0006468
Vium12914g00001 675 Gene3D Transferase(Phosphotransferase) domain 1 446 652 - -
Vium12914g00001 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 493 505 IPR008271 GO:0004672|GO:0006468
Vium12914g00001 675 FunFam serine/threonine-protein kinase PBS1-like 339 445 - -
Vium12914g00001 675 Gene3D Phosphorylase Kinase; domain 1 332 445 - -
Vium12914g00001 675 SMART serkin_6 371 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12914g00001 675 ProSiteProfiles Protein kinase domain profile. 371 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12914g00001 675 SUPERFAMILY Protein kinase-like (PK-like) 358 642 IPR011009 -
Vium12914g00001 675 PANTHER RUST RESISTANCE KINASE LR10-RELATED 342 658 IPR045874 GO:0004672
Vium12914g00001 675 ProSitePatterns Protein kinases ATP-binding region signature. 377 399 IPR017441 GO:0005524
Vium12914g00001 675 CDD STKc_IRAK 377 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12914g00001 Vium-Chr12914 15938 19976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12914g00001 114 671 Receptor kinase-like Gene Family AT1G66910 39.901 8.88e-125 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium12914g00001 PK_Tyr_Ser-Thr 5.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12914g00001 - - vum:124821711 1384.39