Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12907g00006 ATGGTTACCCCACAGCCACAGCTTCAGGTTCAGCCTCAACAGCCCGCACCCTCTTCGCAAGATGAGGCCTTGAAGAGGAACACCGATTGTGTCTACTTCCTTGCATCTCCTTTGACATGCAAAAAGGGAAATGAATGTGAGTACCGCCATAGTGAGTATGCACGTGTTAATCCTAGGGATTGTCGTTATTGGTTGAGTGGCAACTGTTTGAATCCCAAATGTTCATTTCGTCATCCGCCTCTTGATGGCTTGTTAGGAACACAGGCAGCAACAGCTGGTGGACCATCTGTATCTGCACCCCCATCACAGATTCCAACAGCATCCGCAACACATGCATCTTATAATTCCACTAAACAAGCTGTCCCTTGCTTTTTCTTCCAAAAGGGGCTTTGCTTAAAAGGTGACAGATGTGCCTTCATGCATGGACCTCCTGCTCCTAGCACTGGTAATAAAGTAGCTGCTCAGGTTCCAGTTACCAGCCAAGGAGCCGAGAATCCTGGTTTTAAGAAGCCTTTTGGAACCAATGAAAAATATACTCAGGAAAGGAAAACTTCCCAAGGAAGTGTTGCAAAGTCAGGTGGGGGTCCTGAACCTAAACCTGCCCCAAAAATTGAATCTGCTCCTAAAAGAAATATGTTTGAATTGGAGAAGGAAATGCTACCAGTAGGATTTGATAATGAGGCTTCTAGATTTAAGACAAGTTCTCCACCAGTAACCAATGGCCCTACTGTAGTCCGGTCAAGCCGTCTGCATCAAGCTCGTGTGCCAGATGATCACACTTTCCACAGTGGCAAGGACAATGATGAGTTTCTCAGAGAATCGTCTCCTGGGTTCGATGTCCTTGTAGCCGATGAACTTAGGAATTCTGATTACTATCATGGGGAAGATGAATTTGGTAAAGCAAGAGGTCCAAATGAAAAGAACTTAGACTCTTTGAACGAATATGATTTAGGGCATTCTGGTGAATATGGTTTAGCAGCTGATATTGATCGGGAAAGATTTCGTGTGCCCCAAGGTTATGAGTCATATGATCACACGCAGGAACCATATCTGTGGGAGCAGCACAGGAAGGCTTCGGCCCATTTAGACAGAAGGACTCGCCGCAGATCTGGTAGTCCTGAAAATGCTGAGGTCTCAGATCTCCGACATCACTTATCCAAGCGCAGAAAGGTCAATGGTTTGAAATCTGTTGTCAGTCATGATTATGCCCTTGAGGGTCATGGTGAGGAACAAAGTCATCGATCCTTCTCTAGGAAGGACTCACTCCAGTTACCTCTGAATGAGAGCTCCCTCGGTAATCGCTTCCGTGGTAGAATAAAACTTCCTGGAAATGGTGGTGCTGATCAGCTAGAGAGGGATGACAGAGGGAGAATTAGAGGCAGGTTGTTGCCTGGAAGGTTGCAGGCCACTCAGCAAGGAAGGATCCATGATAGAATGCGAGGAAGGTTGCAAGATGATGAGAGGAGAAACTCAAAAGATCGATTAATGGGGAGAGAACTAATAGGTGGTGATAGGAGTGATTTTGCTGGGCCAAAAAGTCTGGCAGAGCTTAAAAATGGGAGGAACCCTGAAAATAGGGAACCACAACCACTGGGAAAGAGAGGAACTTTAAGAGATGATCACCCACAGTCTGAAGATGATCTTCAGTTTGATGGTCCAAAGCCTCTCAGTGAAATTTTGAAGGAGAAGAAAAGAGGAGGACCTGGAGGCAGAGCTGATGCAGACTCGGGGAATGGCAAATCATCTAATATTAAAAATGAAGAAGTTACCAATGGCTCAGATCCTACCCAGGTCACGAACACACAAAACGGTGTGCTGTCTGAGATCAAGGAATATGTCAACAATCAAAATAATGAAGAATCCAAGGTTGAGGTCACTGATGCAGTTGGAGGAGAGACTGGTGCAACTGATGGTCAATACGAGGAGGGAATATACGATGAAGCCGGTGAAGATCAGTATTACGAAGGTGATGATCAGAGAGAAGGAGATTATGAGTATGAACAAGGTGATGAGGGTTACTACGAGTATGAACAAGGTGAAGAGGGTGAAAATCAGGAGGAAGAGTACATGGATGAAGAAGATGGGGATGATTTTGCTAAGAAGATTGGTGTCATTCATTCATAA 2124 0.4524 MVTPQPQLQVQPQQPAPSSQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCRYWLSGNCLNPKCSFRHPPLDGLLGTQAATAGGPSVSAPPSQIPTASATHASYNSTKQAVPCFFFQKGLCLKGDRCAFMHGPPAPSTGNKVAAQVPVTSQGAENPGFKKPFGTNEKYTQERKTSQGSVAKSGGGPEPKPAPKIESAPKRNMFELEKEMLPVGFDNEASRFKTSSPPVTNGPTVVRSSRLHQARVPDDHTFHSGKDNDEFLRESSPGFDVLVADELRNSDYYHGEDEFGKARGPNEKNLDSLNEYDLGHSGEYGLAADIDRERFRVPQGYESYDHTQEPYLWEQHRKASAHLDRRTRRRSGSPENAEVSDLRHHLSKRRKVNGLKSVVSHDYALEGHGEEQSHRSFSRKDSLQLPLNESSLGNRFRGRIKLPGNGGADQLERDDRGRIRGRLLPGRLQATQQGRIHDRMRGRLQDDERRNSKDRLMGRELIGGDRSDFAGPKSLAELKNGRNPENREPQPLGKRGTLRDDHPQSEDDLQFDGPKPLSEILKEKKRGGPGGRADADSGNGKSSNIKNEEVTNGSDPTQVTNTQNGVLSEIKEYVNNQNNEESKVEVTDAVGGETGATDGQYEEGIYDEAGEDQYYEGDDQREGDYEYEQGDEGYYEYEQGEEGENQEEEYMDEEDGDDFAKKIGVIHS 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12907g00006 707 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 21 705 - -
Vium12907g00006 707 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Vium12907g00006 707 SMART c3hfinal6 25 52 IPR000571 GO:0046872
Vium12907g00006 707 SMART c3hfinal6 57 80 IPR000571 GO:0046872
Vium12907g00006 707 Pfam RNA-binding, Nab2-type zinc finger 122 142 - -
Vium12907g00006 707 Gene3D - 107 186 - -
Vium12907g00006 707 Gene3D - 16 81 - -
Vium12907g00006 707 MobiDBLite consensus disorder prediction 1 22 - -
Vium12907g00006 707 Pfam Zinc-finger containing family 25 80 IPR041686 -
Vium12907g00006 707 MobiDBLite consensus disorder prediction 447 461 - -
Vium12907g00006 707 ProSiteProfiles Zinc finger C3H1-type profile. 55 81 IPR000571 GO:0046872
Vium12907g00006 707 MobiDBLite consensus disorder prediction 402 417 - -
Vium12907g00006 707 MobiDBLite consensus disorder prediction 519 570 - -
Vium12907g00006 707 MobiDBLite consensus disorder prediction 576 603 - -
Vium12907g00006 707 SUPERFAMILY CCCH zinc finger 118 142 IPR036855 GO:0046872
Vium12907g00006 707 MobiDBLite consensus disorder prediction 646 694 - -
Vium12907g00006 707 ProSiteProfiles Zinc finger C3H1-type profile. 117 144 IPR000571 GO:0046872
Vium12907g00006 707 MobiDBLite consensus disorder prediction 227 270 - -
Vium12907g00006 707 MobiDBLite consensus disorder prediction 228 247 - -
Vium12907g00006 707 MobiDBLite consensus disorder prediction 160 208 - -
Vium12907g00006 707 ProSiteProfiles Zinc finger C3H1-type profile. 24 53 IPR000571 GO:0046872
Vium12907g00006 707 MobiDBLite consensus disorder prediction 646 707 - -
Vium12907g00006 707 MobiDBLite consensus disorder prediction 473 501 - -
Vium12907g00006 707 FunFam Zinc finger CCCH domain-containing protein 17 18 81 - -
Vium12907g00006 707 MobiDBLite consensus disorder prediction 251 270 - -
Vium12907g00006 707 MobiDBLite consensus disorder prediction 361 384 - -
Vium12907g00006 707 MobiDBLite consensus disorder prediction 361 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12907g00006 Vium-Chr12907 81929 85872 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium12907g00006 zf-CCCH_3 4.6e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12907g00006 - - gmx:102669253 1072