Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12907g00001 ATGCCTGAGGAGTCCATGCCAAAGGAGGCTGCCTACCAGAACATTCACGATGAGTTGCAACTTGATGCCATTCCAAAGCTTAACTTGGCTTCCTTTGTCACCACTTCCATGGAGGAAGAGTGCAACAAACTCATCATGGAATCCATCAACAAGAACTATGTTGACATGGACGAATATCCCATCACCACTGATCTTCACAATCGGTGTGTGAACATGATAGCACGTTTGTTCCATGCTGACGTTGGAGAAGATGAGAATGGTATTGGAGCAGGAACTGTTGGGTCATCAGAAGCAATAATGCTGGCAGGACTTGCATTCAAGAAGAAGTGGCAGAACAAACGTAAGGCAGAAGGCAAACCTTATGATAAGCCTAATTTGGTCACTGGCTCCAATGTACAAGTATGTTGGGAGAAATTTGCCAGGTATTTTGAGGTGGAGTTGAGGGAAGTGGAGGTGAGAGAAGGATACTACGTTATGGATCCTGCCAAAGCAGTCGAGCTGGTTGACGAAAACACTATTTGTGTGGCTGCAATATTGGGTTCAACATACAATGGAGAGTTTGAAGACGTGAAGCTCTTGAATGACTTGCTGCTACAAAAGAACAAGCAAACTGGATGGGAAACTCCTATTCATGTGGATGCTGCAAGTGGTGGTTTCATTGCTCCATTCCTATATCCAGAGCTGGAGTGGGATTTCAGGCTGCCATTGGTGAAGAGCATAAACGTGAGTGGACACAAATATGGGCTTGTATATGCTGGTATTGGTTGGGTTATTTGGAGGACAAAGGATGACTTACCAGAAGACCTTGTGTTCCATATCAATTACCTTGGAGCTGACCAACCCACCTTCACCCTCAATTTCTCCAAAGGTTCTAGTCAGATCATTGCTCAATATTATCAACTAATTCGACTTGGCCAAGAGGGATACTTGAGCATAATGGAGAACTGCAGAGAAAACGCAATGGTGCTGAAGAAAGATTTGGAGAAGAGTGGGCGGTTTAACATACTCTCAAAAGACAATGGTGTTCCAGTGGTGGCATTTTCTTTGAAAGACAGAAGCCAGTACGATGAGTACAAGATATCAGAGATGCTGCGGCGGCACGGTTGGATAGTGCCAGCTTATCCAATGCCACCTGCTGCTCAGCACATCAATGTGCTCCGTGTGGTGATCAGGGCTGAGTTTTCACGCACCCTTGCTGAACGCCTTGCCTTTGACATACACAACGTGCTGCATGAGCTTGAAAAGTTACCTCCCCCCACAATGATCAATAACACTGAGGAAGTGAAGAAGGCCTTGGTTGATAATGGAGTCAAGAAAAATTCCATGGATACACACAAGGAAATCATTGCTCAAGAATCCAACAAGCGTCAGAAAATCATGGCGGCCTAG 1389 0.4521 MPEESMPKEAAYQNIHDELQLDAIPKLNLASFVTTSMEEECNKLIMESINKNYVDMDEYPITTDLHNRCVNMIARLFHADVGEDENGIGAGTVGSSEAIMLAGLAFKKKWQNKRKAEGKPYDKPNLVTGSNVQVCWEKFARYFEVELREVEVREGYYVMDPAKAVELVDENTICVAAILGSTYNGEFEDVKLLNDLLLQKNKQTGWETPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKDDLPEDLVFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGQEGYLSIMENCRENAMVLKKDLEKSGRFNILSKDNGVPVVAFSLKDRSQYDEYKISEMLRRHGWIVPAYPMPPAAQHINVLRVVIRAEFSRTLAERLAFDIHNVLHELEKLPPPTMINNTEEVKKALVDNGVKKNSMDTHKEIIAQESNKRQKIMAA 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12907g00001 462 SUPERFAMILY PLP-dependent transferases 1 415 IPR015424 -
Vium12907g00001 462 Gene3D - 35 329 IPR015421 GO:0003824
Vium12907g00001 462 FunFam Glutamate decarboxylase 330 417 - -
Vium12907g00001 462 Gene3D - 1 34 - -
Vium12907g00001 462 Pfam Pyridoxal-dependent decarboxylase conserved domain 2 350 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vium12907g00001 462 PANTHER GLUTAMATE DECARBOXYLASE 1 455 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vium12907g00001 462 FunFam Glutamate decarboxylase 35 329 - -
Vium12907g00001 462 NCBIfam glutamate decarboxylase 1 413 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vium12907g00001 462 Gene3D - 330 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12907g00001 Vium-Chr12907 8309 10285 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12907g00001 1 450 Calmodulin-binding Proteins AT5G17330 75.824 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12907g00001 K01580 - gmx:100782330 862.448