Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium12905g00001 | ATGGTGGACGGCGGAGAATTCGCCGGCACCATTTGCTCGATCTGTTATGAGCCTCTCAACCCCATTACCGAGGACCTCCAATCGGTTTCCATCTGCGGCCACGTCTTTCACGAGCTTTGTCTGCAGCAATGGTTCGAGTACTCTTCGAAAGGGAAGAAACACACTTGCCCCATTTGCAAACAGAGTTGCGGGGCCAATGACGCGTGCAGGCTTTATTTTCAGTCAGTGGGGGACCCGAGCGATGGCGGGAAGCTTCTGAAGAGCTTTGAATCTGAGGAAAATGTCGGGCTTCTGCGTACGGAAGTGAAGAGATTGGAGGTGAAAGTTTCGGGGCTTAATTCTGAGCTAGAACGGCAAACAAAGGAATTAGAAGGAGTTAAGCAGGAGGTGCTTTTATTTAATTTTATTTTGTGTTTTATTGTGTTATTTATTCTGTTTTATATATGGGTGTGTTTAGTAGGAGACTAA | 468 | 0.4658 | MVDGGEFAGTICSICYEPLNPITEDLQSVSICGHVFHELCLQQWFEYSSKGKKHTCPICKQSCGANDACRLYFQSVGDPSDGGKLLKSFESEENVGLLRTEVKRLEVKVSGLNSELERQTKELEGVKQEVLLFNFILCFIVLFILFYIWVCLVGD | 155 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium12905g00001 | 155 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 8 | 129 | IPR013083 | - | |
| Vium12905g00001 | 155 | SUPERFAMILY | RING/U-box | 10 | 65 | - | - | |
| Vium12905g00001 | 155 | Coils | Coil | 102 | 129 | - | - | |
| Vium12905g00001 | 155 | ProSiteProfiles | Zinc finger RING-type profile. | 12 | 60 | IPR001841 | - | |
| Vium12905g00001 | 155 | SMART | ringv_2 | 11 | 60 | IPR011016 | GO:0008270 | |
| Vium12905g00001 | 155 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 1 | 132 | - | - | |
| Vium12905g00001 | 155 | SMART | ring_2 | 12 | 59 | IPR001841 | - | |
| Vium12905g00001 | 155 | Pfam | Ring finger domain | 11 | 60 | IPR001841 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium12905g00001 | 1 | 122 | C3H Transcription Factor Family | AT4G01270 | 56.557 | 1.51e-39 | 137 |